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Pull requests: nf-core/modules

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Pull requests list

Spaceranger topics
#9787 opened Jan 27, 2026 by fasterius Draft
3 of 5 tasks
Add Autocycler postassembly subworkflow Ready for Review
#9786 opened Jan 27, 2026 by dwells-eit Loading…
5 of 10 tasks
Fix file extension for module PBMARKDUP
#9784 opened Jan 27, 2026 by sainsachiko Loading…
3 of 17 tasks
Swap bwa/mem to topic and combine output channels
#9783 opened Jan 27, 2026 by SPPearce Loading…
update amulety version
#9781 opened Jan 26, 2026 by ggabernet Loading…
17 tasks
Add module stainwarpy/transformsegmask
#9778 opened Jan 26, 2026 by tckumarasekara Loading…
11 of 17 tasks
Add new module stainwarpy/register
#9777 opened Jan 26, 2026 by tckumarasekara Loading…
11 of 17 tasks
Add new module stainwarpy/extractchannel
#9776 opened Jan 26, 2026 by tckumarasekara Loading…
11 of 17 tasks
Update Rundbcan modules
#9768 opened Jan 26, 2026 by HaidYi Loading…
11 of 16 tasks
Update BCFTOOLS/ISEC: additional arguments
#9766 opened Jan 23, 2026 by georgiakes Loading…
2 of 17 tasks
miniasm/ updated to use the new versions topics
#9755 opened Jan 22, 2026 by MohineTAlam Loading…
17 tasks done
migrate toulligqc to topic versions
#9750 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
migrate untar to versions topic
#9749 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
migrate shovill module to topic versions
#9748 opened Jan 22, 2026 by eit-maxlcummins Loading…
5 of 10 tasks
Add nextflow lint
#9726 opened Jan 21, 2026 by maxulysse Loading…
17 tasks
Seqkit replace - fix #9647 and #9646
#9686 opened Jan 19, 2026 by ammaraziz Loading…
Update all deeptools conda environment YAML files to version 3.5.6
#9685 opened Jan 16, 2026 by bentyeh Loading…
2 of 17 tasks
new subworkflow - fastq shortreads preprocess qc
#9665 opened Jan 15, 2026 by vagkaratzas Loading…
8 of 17 tasks
Add ViralConsensus module
#9655 opened Jan 14, 2026 by lucaspatel Loading…
15 of 17 tasks
add nirvana
#9633 opened Jan 9, 2026 by FriederikeHanssen Loading…
17 tasks
BBsplit unmapped - enhancement
#9627 opened Jan 8, 2026 by EladH1 Loading…
4 of 17 tasks
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