Skip to content

update module: fastqdl#11741

Draft
camlloyd wants to merge 1 commit into
nf-core:masterfrom
camlloyd:fastqdl
Draft

update module: fastqdl#11741
camlloyd wants to merge 1 commit into
nf-core:masterfrom
camlloyd:fastqdl

Conversation

@camlloyd
Copy link
Copy Markdown
Member

PR checklist

Closes #11735 by updating test snapshots

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@camlloyd
Copy link
Copy Markdown
Member Author

Note: change to test-run-info.tsv:md5 due to addition of 6 new columns from ENA Portal API:

library_prep_location	rna_prep_3_protocol	ph	sequencing_longitude	tissue_type	isolation_source

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

update module: fastqdl

1 participant