Update phasing and imputation sbwf

[LouisLeNezet]

PR checklist

This PR solve two current issue in phaseimpute:

• Early chunks have a regionout value with less numbers, throwing off the GLIMPSE_LIGATE sorting file.
  • solution: add 0 padding in front of regionout
• Imputed chunks use groupTuple() that wait for all chunks to be imputed for all chromosomes.
  • solution: add regionSize key to register the number of chunks per chromosome and use it for grouping

No test was changed expect for the some stub as we need non null chunks for the tokenization to work.

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