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bf5b954
fixing line lengths
SamChou05 Nov 16, 2024
7cef054
Merge branch 'tractometry:main' into main
SamChou05 Dec 16, 2024
ad58b1c
plotting latent space
SamChou05 Dec 17, 2024
a75a9a7
change decoder
SamChou05 Dec 18, 2024
d824542
removing unecessary file
SamChou05 Dec 18, 2024
07e3cc5
removing file
SamChou05 Dec 19, 2024
253a60a
moving code to pt_models
SamChou05 Dec 19, 2024
d9365ee
temporary adding for debugging
SamChou05 Dec 23, 2024
d0d7526
making batchsize alterable
SamChou05 Dec 28, 2024
97e318a
adding linear autoencoders
SamChou05 Dec 28, 2024
b33edb5
removing temp file
SamChou05 Dec 28, 2024
a5ae6d1
adding comments for future use
SamChou05 Dec 28, 2024
e1840dd
smoke tests for linear autoencoders
SamChou05 Dec 31, 2024
bbc1131
updating class names
SamChou05 Dec 31, 2024
7024058
condensing tests
SamChou05 Jan 16, 2025
a20190f
adding conv autoencoder
SamChou05 Jan 16, 2025
b531200
one tract autoencoder
SamChou05 Jan 19, 2025
d4f43b8
adding fit and fit transform
SamChou05 Jan 19, 2025
4a3869e
updated training loop
SamChou05 Jan 20, 2025
e6137d5
test
SamChou05 Jan 20, 2025
aa0f0c5
adding less tract autoencode
SamChou05 Jan 20, 2025
535b59b
Merge branch 'tractometry:main' into vae
SamChou05 Feb 11, 2025
85c3bc2
starting to shift and modularize experiments ran on autoencodoers
SamChou05 Feb 11, 2025
573ccab
adding linear one tract autoencoder for experiemnts
SamChou05 Feb 11, 2025
d5a8aef
fixing ruffs
SamChou05 Feb 12, 2025
9f9ee83
cleaning up code
SamChou05 Feb 13, 2025
325dbf5
fixing ruffs
SamChou05 Feb 13, 2025
c784606
comment too long
SamChou05 Feb 13, 2025
fc0dde4
updated comment
SamChou05 Feb 18, 2025
f664de8
made into a method
SamChou05 Feb 18, 2025
4ad052c
renaming for clarity
SamChou05 Feb 18, 2025
fc7095f
more renaming for clarity
SamChou05 Feb 18, 2025
a186f6b
updating renaming
SamChou05 Feb 18, 2025
d41db07
updaing testa dn renaming
SamChou05 Feb 18, 2025
ec3d2bc
reducing pt models redundant code
SamChou05 Feb 23, 2025
b857be3
reducing redundant code
SamChou05 Feb 23, 2025
95ee24b
trimming down test code
SamChou05 Feb 23, 2025
037b80b
adding first tract fit to autoencoder
SamChou05 Feb 23, 2025
f651dfb
removing expriement code and moving to separate repo
SamChou05 Feb 24, 2025
d8166be
thinning pt model code
SamChou05 Feb 26, 2025
91072a7
cleaning up code
SamChou05 Feb 26, 2025
74d767a
adding first tract memthod
SamChou05 Feb 26, 2025
0e985fe
adding back len to class
SamChou05 Feb 26, 2025
0b8d917
latent dim to latent dims
SamChou05 Feb 26, 2025
31e28ff
latent dim to latent dims
SamChou05 Feb 26, 2025
eb85909
updating tests for autoencoders
SamChou05 Feb 26, 2025
9580264
changing device
SamChou05 Feb 26, 2025
551bb5c
changing device
SamChou05 Feb 26, 2025
3fe38d7
changing autoencoder architecture
SamChou05 Feb 26, 2025
91242ec
testing something
SamChou05 Feb 26, 2025
7cddf09
testing something
SamChou05 Feb 26, 2025
80ea167
testing something
SamChou05 Feb 26, 2025
024fc47
cleaning up code
SamChou05 Feb 26, 2025
4db809c
fixing returns
SamChou05 Feb 26, 2025
40b607a
fixing autoencoder FC
SamChou05 Feb 26, 2025
300576b
simplifying fits and fixing transforms for each autoencoder
SamChou05 Feb 27, 2025
7967143
cleaning up code
SamChou05 Feb 27, 2025
389545f
cleanign up code
SamChou05 Feb 27, 2025
2cba43e
fixing tests
SamChou05 Feb 27, 2025
48b08af
fixing padding issue
SamChou05 Feb 28, 2025
471b3a3
adding fa flattened method, renaming, and adding comments
SamChou05 Mar 11, 2025
1177658
updated variational auteoncoders
SamChou05 Mar 11, 2025
31aaeaf
added utilities to accompany better variational autoencoders
SamChou05 Mar 11, 2025
b23c1c6
changing convolutional variational archetecture
SamChou05 Mar 13, 2025
ff45b08
no need for recon loss anymore
SamChou05 Mar 13, 2025
7faec95
separating decoder and variatonal conv decoder
SamChou05 Mar 13, 2025
456a7d8
fixing model arch
SamChou05 Mar 13, 2025
edf4d9e
adding history for saving info
SamChou05 Mar 13, 2025
8b6bd86
fixing otuput padding issue
SamChou05 Mar 18, 2025
ea5b280
adding notes
SamChou05 Mar 18, 2025
1002a2e
removing unecessary comments
SamChou05 Mar 22, 2025
cd4c4fe
changing mu to mean for clarity
SamChou05 Mar 22, 2025
db59878
Update afqinsight/nn/pt_models.py comment for beta annealing
SamChou05 Mar 22, 2025
94f9f98
Update afqinsight/nn/pt_models.py updating comment for beta annealing
SamChou05 Mar 22, 2025
433511f
final string fix
SamChou05 Mar 22, 2025
d23e025
Merge remote-tracking branch 'origin/vae' into vae
SamChou05 Mar 22, 2025
010a98b
refactoring encoder classes
SamChou05 Mar 23, 2025
20a994a
changing prep_fa_dataset for more customizability
SamChou05 Mar 23, 2025
d6744d3
removing experiment - specific code for experiemnts
SamChou05 Apr 2, 2025
0fbf0e0
removing unecessary commits
SamChou05 Apr 2, 2025
418d626
fixing tests
SamChou05 Apr 2, 2025
46f8997
changed convolutional models to be more adaptable to more situations
SamChou05 Apr 2, 2025
1d1f8e5
adding changes to non variational conv
SamChou05 Apr 2, 2025
39e2331
making code more consistent
SamChou05 Apr 2, 2025
7762226
adding docstrings
SamChou05 Apr 2, 2025
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