Skip to content

Add new quilt2 module#11121

Open
atrigila wants to merge 7 commits intonf-core:masterfrom
atrigila:add_quilt2
Open

Add new quilt2 module#11121
atrigila wants to merge 7 commits intonf-core:masterfrom
atrigila:add_quilt2

Conversation

@atrigila
Copy link
Copy Markdown
Contributor

@atrigila atrigila commented Apr 5, 2026

@atrigila atrigila marked this pull request as ready for review April 5, 2026 21:28
@atrigila atrigila requested a review from LouisLeNezet April 5, 2026 21:28
Copy link
Copy Markdown
Contributor

@LouisLeNezet LouisLeNezet left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Just a few questions but good to go otherwise !


output:
tuple val(meta), path("*.vcf.gz") , emit: vcf
tuple val(meta), path("*.vcf.gz.tbi") , emit: tbi , optional: true
Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

In which case is it omitted ?

Copy link
Copy Markdown
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Sorry I did not understand this comment

Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I was just wondering if the tbi output is ever omitted ?
Isn't it always produced ?

@atrigila atrigila requested a review from LouisLeNezet April 7, 2026 13:46
Copy link
Copy Markdown
Contributor

@LouisLeNezet LouisLeNezet left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Just a small deletion needed, but ready to go otherwise !
Would it be also possible to have a non-stub test with the optional outputs ?

Comment on lines +12 to +14
tag "wget"
tag "xz/decompress"
tag "untar"
Copy link
Copy Markdown
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I guess these modules are no more needed ?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants