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Add bdv method to return info about project

enhancementNew feature or requestNew feature or request

next-coding-sessionLook into during the next CS.Look into during the next CS.

next-releaseIssues blocking the next releaseIssues blocking the next release

Status: Closed (completed).

Feature

#96 In imcf/python-imcflibs;

· by lguerard was closed on Jan 19, 2026

Mistake while referencing parameter in method body

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Task

#113 In imcf/python-imcflibs;

· by rohangirishrao was closed on Jan 16, 2026

Add option to crop region

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

next-releaseIssues blocking the next releaseIssues blocking the next release

unit testingA unit test should be createdA unit test should be created

Status: Merged (completed).

imcf/python-imcflibsnumber 108

#108 In imcf/python-imcflibs;

· by CellKai was closed on Jan 21, 2026

Bdv update library

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

conventionsIssue with formatting / naming / ...Issue with formatting / naming / ...

new-majorChange introduced in PR will require a new major release.Change introduced in PR will require a new major release.

next-releaseIssues blocking the next releaseIssues blocking the next release

Status: Merged (completed).

imcf/python-imcflibsnumber 118

#118 In imcf/python-imcflibs;

· by lguerard was closed on Jan 21, 2026

Add option to save IMS file in a specified location

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

enhancementNew feature or requestNew feature or request

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

Status: Merged (completed).

imcf/python-imcflibsnumber 100

#100 In imcf/python-imcflibs;

· by lguerard was closed on Jan 21, 2026

Add method to read metadata back from the xml

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

imcf/python-imcflibsnumber 102

#102 In imcf/python-imcflibs;

· by lguerard was closed on Jan 19, 2026

Fix function to not split time points by default

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

next-releaseIssues blocking the next releaseIssues blocking the next release

unit testingA unit test should be createdA unit test should be created

Status: Merged (completed).

imcf/python-imcflibsnumber 107

#107 In imcf/python-imcflibs;

· by CellKai was closed on Mar 25, 2026

Add method to save Fiji script parameters, and add example to opening an image

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

enhancementNew feature or requestNew feature or request

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

Status: Merged (completed).

imcf/python-imcflibsnumber 111

#111 In imcf/python-imcflibs;

· by rohangirishrao was closed on Jan 16, 2026

Remove method objects3d.get_objects_within_intensity

documentationMissing documentation, docstring conventions, ...Missing documentation, docstring conventions, ...

new-majorChange introduced in PR will require a new major release.Change introduced in PR will require a new major release.

Status: Merged (completed).

imcf/python-imcflibsnumber 123

#123 In imcf/python-imcflibs;

· by rohangirishrao was closed on Jan 21, 2026

Fix typo in apply_threshold

bugSomething isn't workingSomething isn't working

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

Status: Merged (completed).

imcf/python-imcflibsnumber 121

#121 In imcf/python-imcflibs;

· by rohangirishrao was closed on Jan 16, 2026

Spelling mistake in bdv.interest_points_registration ?

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Bug

#127 In imcf/python-imcflibs;

· by ehrenfeu was closed on Jan 19, 2026

Incomplete conditional path in get_processing_settings

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

Task

#128 In imcf/python-imcflibs;

· by ehrenfeu was closed on Jan 19, 2026

Variable type mixup for channel_source

invalidThis doesn't seem rightThis doesn't seem right

Status: Closed (completed).

Bug

#129 In imcf/python-imcflibs;

· by ehrenfeu was closed on Jan 19, 2026

fix(bdv): correct lambda spelling and improve formatting

bugSomething isn't workingSomething isn't working

conventionsIssue with formatting / naming / ...Issue with formatting / naming / ...

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

Status: Merged (completed).

imcf/python-imcflibsnumber 130

#130 In imcf/python-imcflibs;

· by lguerard was closed on Jan 19, 2026

Validate slice count before subtraction

bugSomething isn't workingSomething isn't working

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

next-releaseIssues blocking the next releaseIssues blocking the next release

Status: Merged (completed).

imcf/python-imcflibsnumber 117

#117 In imcf/python-imcflibs;

· by lguerard was closed on Jan 19, 2026

Fix/129 bdv variable type mixup

conventionsIssue with formatting / naming / ...Issue with formatting / naming / ...

Status: Merged (completed).

imcf/python-imcflibsnumber 131

#131 In imcf/python-imcflibs;

· by lguerard was closed on Jan 19, 2026

Validate processing settings

conventionsIssue with formatting / naming / ...Issue with formatting / naming / ...

Status: Merged (completed).

imcf/python-imcflibsnumber 132

#132 In imcf/python-imcflibs;

· by lguerard was closed on Jan 19, 2026

Add tests for pathtools.listdir_matching

unit testingA unit test should be createdA unit test should be created

Status: Merged (completed).

imcf/python-imcflibsnumber 122

#122 In imcf/python-imcflibs;

· by lguerard was closed on Apr 7, 2026

Create tests for imcflibs.pathtools.listdir_matching

e2e testingEnd-to-end / interactive testingEnd-to-end / interactive testing

next-coding-sessionLook into during the next CS.Look into during the next CS.

unit testingA unit test should be createdA unit test should be created

Status: Closed (completed).

Task

#119 In imcf/python-imcflibs;

· by ehrenfeu was closed on Apr 7, 2026

Add function to convert size from bytes to a more readable format

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

enhancementNew feature or requestNew feature or request

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

Status: Merged (completed).

imcf/python-imcflibsnumber 101

#101 In imcf/python-imcflibs;

· by lguerard was closed on Mar 25, 2026

Add installation instructions

documentationMissing documentation, docstring conventions, ...Missing documentation, docstring conventions, ...

Status: Merged (completed).

imcf/python-imcflibsnumber 133

#133 In imcf/python-imcflibs;

· by rohangirishrao was closed on Jan 22, 2026

Method crashes if link ends with a space

bugSomething isn't workingSomething isn't working

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

new-minorChange introduced in PR will require a new minor release.Change introduced in PR will require a new minor release.

next-releaseIssues blocking the next releaseIssues blocking the next release

Status: Closed (completed).

Bug

#115 In imcf/python-imcflibs;

· by lguerard was closed on Jan 23, 2026

Sanitize input string in omerotools.parse_url

bugSomething isn't workingSomething isn't working

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

next-releaseIssues blocking the next releaseIssues blocking the next release

Status: Merged (completed).

imcf/python-imcflibsnumber 134

#134 In imcf/python-imcflibs;

· by rohangirishrao was closed on Jan 23, 2026

Add markdownlint action

changelogNeeds to be mentioned in release changelogsNeeds to be mentioned in release changelogs

conventionsIssue with formatting / naming / ...Issue with formatting / naming / ...

documentationMissing documentation, docstring conventions, ...Missing documentation, docstring conventions, ...

Status: Merged (completed).

imcf/python-imcflibsnumber 135

#135 In imcf/python-imcflibs;

· by ehrenfeu was closed on Jan 23, 2026

Change AUTO button to use CMY for colorblind people

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

Feature

#137 In imcf/python-imcflibs;

· by lguerard was closed on Mar 25, 2026