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@imcf

IMCF

Imaging Core Facility, University of Basel

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  1. auto-tx auto-tx Public

    AutoTx - an intelligent background file transfer service for Windows.

    C# 28 1

  2. pyppms pyppms Public

    📑 🕙 🐍 A Python package to communicate with Stratocore's PUMAPI.

    Python 6 3

  3. imcf-fiji-scripts imcf-fiji-scripts Public

    🔧 📝 ☕ 🔬 Scripts for Fiji provided by the Imaging Core Facility, Biozentrum, University of Basel

    Python 4 3

  4. python-imcflibs python-imcflibs Public

    🐍 ☕ 🔩 🔧 🪛 A collection of commonly used Python helper functions.

    Python 1 3

  5. imcf-fiji-toolbars imcf-fiji-toolbars Public

    ☕ 🔬 🔣 Fiji Action Bars provided by the IMCF.

    ImageJ Macro

  6. noisee noisee Public

    🔬 NoiSee: An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

    Python 4 1

Repositories

Showing 10 of 106 repositories
  • imarisconverter-wine Public Forked from CBI-PITT/ImarisFileConverter_wine

    Imaris File Converter for wine on Linux

    imcf/imarisconverter-wine’s past year of commit activity
    0 1 0 0 Updated Feb 20, 2026
  • wine Public Forked from wine-mirror/wine
    imcf/wine’s past year of commit activity
    C 0 1,269 0 0 Updated Feb 20, 2026
  • RESPAN Public Forked from lahammond/RESPAN

    Robust, accurate, and unbiased quantification of neurons and dendritic spines.

    imcf/RESPAN’s past year of commit activity
    Python 0 GPL-3.0 8 0 0 Updated Feb 18, 2026
  • ijl-utilities-wrappers Public Forked from BIOP/ijl-utilities-wrappers

    Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)

    imcf/ijl-utilities-wrappers’s past year of commit activity
    Java 0 MIT 9 0 0 Updated Feb 18, 2026
  • auto-tx Public

    AutoTx - an intelligent background file transfer service for Windows.

    imcf/auto-tx’s past year of commit activity
    C# 28 GPL-3.0 1 13 0 Updated Feb 13, 2026
  • cellpose Public Forked from MouseLand/cellpose

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    imcf/cellpose’s past year of commit activity
    Python 0 BSD-3-Clause 586 0 0 Updated Feb 9, 2026
  • python-imcflibs Public

    🐍 ☕ 🔩 🔧 🪛 A collection of commonly used Python helper functions.

    imcf/python-imcflibs’s past year of commit activity
    Python 1 GPL-3.0 3 9 3 Updated Jan 23, 2026
  • python-micrometa Public

    ☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

    imcf/python-micrometa’s past year of commit activity
    Python 1 0 0 0 Updated Jan 22, 2026
  • imcf-fiji-mocks Public

    Python mocks 🧌 providing dummy imports e.g. for testing the IMCF Fiji Python packages.

    imcf/imcf-fiji-mocks’s past year of commit activity
    Python 1 2 0 0 Updated Jan 16, 2026
  • imcf.github.io Public

    IMCF github pages

    imcf/imcf.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 5, 2026