GEOPY-2419: create a function in run.py to run from an outgroup

environments/py-3.10-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 74368e25e3bc7f296b5e75d62111e2e2fe76bb281b8ce76523ee238f01e372c7
+# input_hash: 8f70d81d47096021c15198e0a9db361184aabf56db353452c7852e436c5065f2
 
 channels:
   - conda-forge
@@ -57,7 +57,7 @@ dependencies:
   - libssh2=1.11.1=hcf80075_0
   - libstdcxx=15.1.0=h8f9b012_5
   - libstdcxx-ng=15.1.0=h4852527_5
-  - libtiff=4.7.0=h8261f1e_6
+  - libtiff=4.7.1=h8261f1e_0
   - libuuid=2.41.1=he9a06e4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
@@ -100,7 +100,7 @@ dependencies:
   - yaml=0.2.5=h280c20c_3
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.10-linux-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 74368e25e3bc7f296b5e75d62111e2e2fe76bb281b8ce76523ee238f01e372c7
+# input_hash: 8f70d81d47096021c15198e0a9db361184aabf56db353452c7852e436c5065f2
 
 channels:
   - conda-forge
@@ -53,7 +53,7 @@ dependencies:
   - libssh2=1.11.1=hcf80075_0
   - libstdcxx=15.1.0=h8f9b012_5
   - libstdcxx-ng=15.1.0=h4852527_5
-  - libtiff=4.7.0=h8261f1e_6
+  - libtiff=4.7.1=h8261f1e_0
   - libuuid=2.41.1=he9a06e4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
@@ -88,7 +88,7 @@ dependencies:
   - xorg-libxdmcp=1.1.5=hb9d3cd8_0
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.10-win-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: win-64
-# input_hash: 6edc8c2f6d302b4271667ea90878bf83a9f922e21ecfb73c480998517a49dec7
+# input_hash: e2b9ff57aeb438c3e98a4060909ac33160218c068978035942766c5e088bc885
 
 channels:
   - conda-forge
@@ -46,7 +46,7 @@ dependencies:
   - libpng=1.6.50=h7351971_1
   - libsqlite=3.50.4=hf5d6505_0
   - libssh2=1.11.1=h9aa295b_0
-  - libtiff=4.7.0=h550210a_6
+  - libtiff=4.7.1=h550210a_0
   - libwebp-base=1.6.0=h4d5522a_0
   - libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
   - libxcb=1.17.0=h0e4246c_0
@@ -95,7 +95,7 @@ dependencies:
   - yaml=0.2.5=h6a83c73_3
   - zstd=1.5.7=hbeecb71_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.10-win-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: win-64
-# input_hash: 6edc8c2f6d302b4271667ea90878bf83a9f922e21ecfb73c480998517a49dec7
+# input_hash: e2b9ff57aeb438c3e98a4060909ac33160218c068978035942766c5e088bc885
 
 channels:
   - conda-forge
@@ -42,7 +42,7 @@ dependencies:
   - libpng=1.6.50=h7351971_1
   - libsqlite=3.50.4=hf5d6505_0
   - libssh2=1.11.1=h9aa295b_0
-  - libtiff=4.7.0=h550210a_6
+  - libtiff=4.7.1=h550210a_0
   - libwebp-base=1.6.0=h4d5522a_0
   - libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
   - libxcb=1.17.0=h0e4246c_0
@@ -83,7 +83,7 @@ dependencies:
   - xorg-libxdmcp=1.1.5=h0e40799_0
   - zstd=1.5.7=hbeecb71_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.11-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 2467c021e67c6ed79cb5c2602cf372ee016ac4ab319342fc1c2b0d3f606586e9
+# input_hash: 98d03015fec33c4d2c8f1b7b10a1172ca3bc4381cf747261cbe925e62cd71eca
 
 channels:
   - conda-forge
@@ -57,7 +57,7 @@ dependencies:
   - libssh2=1.11.1=hcf80075_0
   - libstdcxx=15.1.0=h8f9b012_5
   - libstdcxx-ng=15.1.0=h4852527_5
-  - libtiff=4.7.0=h8261f1e_6
+  - libtiff=4.7.1=h8261f1e_0
   - libuuid=2.41.1=he9a06e4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
@@ -100,7 +100,7 @@ dependencies:
   - yaml=0.2.5=h280c20c_3
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.11-linux-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 2467c021e67c6ed79cb5c2602cf372ee016ac4ab319342fc1c2b0d3f606586e9
+# input_hash: 98d03015fec33c4d2c8f1b7b10a1172ca3bc4381cf747261cbe925e62cd71eca
 
 channels:
   - conda-forge
@@ -53,7 +53,7 @@ dependencies:
   - libssh2=1.11.1=hcf80075_0
   - libstdcxx=15.1.0=h8f9b012_5
   - libstdcxx-ng=15.1.0=h4852527_5
-  - libtiff=4.7.0=h8261f1e_6
+  - libtiff=4.7.1=h8261f1e_0
   - libuuid=2.41.1=he9a06e4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
@@ -88,7 +88,7 @@ dependencies:
   - xorg-libxdmcp=1.1.5=hb9d3cd8_0
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.11-win-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: win-64
-# input_hash: a11d50f0f2ccc80642736d72d5cedd0262e46f9d0ce19283394d7bb8861b05e9
+# input_hash: 3b5cba17bc125c1710296cce63d69f8f1e830c9f5c025eaad24646f040fb967d
 
 channels:
   - conda-forge
@@ -46,7 +46,7 @@ dependencies:
   - libpng=1.6.50=h7351971_1
   - libsqlite=3.50.4=hf5d6505_0
   - libssh2=1.11.1=h9aa295b_0
-  - libtiff=4.7.0=h550210a_6
+  - libtiff=4.7.1=h550210a_0
   - libwebp-base=1.6.0=h4d5522a_0
   - libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
   - libxcb=1.17.0=h0e4246c_0
@@ -95,7 +95,7 @@ dependencies:
   - yaml=0.2.5=h6a83c73_3
   - zstd=1.5.7=hbeecb71_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.11-win-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: win-64
-# input_hash: a11d50f0f2ccc80642736d72d5cedd0262e46f9d0ce19283394d7bb8861b05e9
+# input_hash: 3b5cba17bc125c1710296cce63d69f8f1e830c9f5c025eaad24646f040fb967d
 
 channels:
   - conda-forge
@@ -42,7 +42,7 @@ dependencies:
   - libpng=1.6.50=h7351971_1
   - libsqlite=3.50.4=hf5d6505_0
   - libssh2=1.11.1=h9aa295b_0
-  - libtiff=4.7.0=h550210a_6
+  - libtiff=4.7.1=h550210a_0
   - libwebp-base=1.6.0=h4d5522a_0
   - libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
   - libxcb=1.17.0=h0e4246c_0
@@ -83,7 +83,7 @@ dependencies:
   - xorg-libxdmcp=1.1.5=h0e40799_0
   - zstd=1.5.7=hbeecb71_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.12-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: c037c60e4a5f0cf9a5e61ff2f264e541fe93097019fa23937727bee9560931f8
+# input_hash: b98a45216385660ceb23e80d763cf44bb1e1806d2d80cf5f33d1168e9136aab7
 
 channels:
   - conda-forge
@@ -57,7 +57,7 @@ dependencies:
   - libssh2=1.11.1=hcf80075_0
   - libstdcxx=15.1.0=h8f9b012_5
   - libstdcxx-ng=15.1.0=h4852527_5
-  - libtiff=4.7.0=h8261f1e_6
+  - libtiff=4.7.1=h8261f1e_0
   - libuuid=2.41.1=he9a06e4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
@@ -100,7 +100,7 @@ dependencies:
   - yaml=0.2.5=h280c20c_3
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.12-linux-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: c037c60e4a5f0cf9a5e61ff2f264e541fe93097019fa23937727bee9560931f8
+# input_hash: b98a45216385660ceb23e80d763cf44bb1e1806d2d80cf5f33d1168e9136aab7
 
 channels:
   - conda-forge
@@ -53,7 +53,7 @@ dependencies:
   - libssh2=1.11.1=hcf80075_0
   - libstdcxx=15.1.0=h8f9b012_5
   - libstdcxx-ng=15.1.0=h4852527_5
-  - libtiff=4.7.0=h8261f1e_6
+  - libtiff=4.7.1=h8261f1e_0
   - libuuid=2.41.1=he9a06e4_0
   - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
@@ -88,7 +88,7 @@ dependencies:
   - xorg-libxdmcp=1.1.5=hb9d3cd8_0
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.12-win-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: win-64
-# input_hash: ae90824004a23a39b3f36248bb2afec12708951659391c009439ee746e22fc4f
+# input_hash: 419359b0e2eefb802674bbaba5588b034df7ac8e2b6dbaf23f658a96dec2c8f9
 
 channels:
   - conda-forge
@@ -46,7 +46,7 @@ dependencies:
   - libpng=1.6.50=h7351971_1
   - libsqlite=3.50.4=hf5d6505_0
   - libssh2=1.11.1=h9aa295b_0
-  - libtiff=4.7.0=h550210a_6
+  - libtiff=4.7.1=h550210a_0
   - libwebp-base=1.6.0=h4d5522a_0
   - libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
   - libxcb=1.17.0=h0e4246c_0
@@ -95,7 +95,7 @@ dependencies:
   - yaml=0.2.5=h6a83c73_3
   - zstd=1.5.7=hbeecb71_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.12-win-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: win-64
-# input_hash: ae90824004a23a39b3f36248bb2afec12708951659391c009439ee746e22fc4f
+# input_hash: 419359b0e2eefb802674bbaba5588b034df7ac8e2b6dbaf23f658a96dec2c8f9
 
 channels:
   - conda-forge
@@ -42,7 +42,7 @@ dependencies:
   - libpng=1.6.50=h7351971_1
   - libsqlite=3.50.4=hf5d6505_0
   - libssh2=1.11.1=h9aa295b_0
-  - libtiff=4.7.0=h550210a_6
+  - libtiff=4.7.1=h550210a_0
   - libwebp-base=1.6.0=h4d5522a_0
   - libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
   - libxcb=1.17.0=h0e4246c_0
@@ -83,7 +83,7 @@ dependencies:
   - xorg-libxdmcp=1.1.5=h0e40799_0
   - zstd=1.5.7=hbeecb71_2
   - pip:
-    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@0e6cacf4d90e18bc18b4247c839761b54a392ac6
 
 variables:
   KMP_WARNINGS: 0

geoapps_utils/base.py

@@ -87,16 +87,36 @@ def run(self):
         """Run the application."""
 
     @classmethod
-    def start(cls, filepath: str | Path, mode="r+", **kwargs) -> Driver:
+    def read_ui_json(cls, filepath: str | Path, **kwargs) -> InputFile:
         """
-        Run application specified by 'filepath' ui.json file.
+        Read a ui.json file and return an InputFile object.
 
         :param filepath: Path to valid ui.json file for the application driver.
         :param kwargs: Additional keyword arguments for InputFile read_ui_json.
+
+        :return: InputFile object.
         """
         logger.info("Loading input file . . .")
         filepath = Path(filepath).resolve()
-        ifile = InputFile.read_ui_json(filepath, validations=cls._validations, **kwargs)
+        return InputFile.read_ui_json(filepath, validations=cls._validations, **kwargs)
+
+    @classmethod
+    def start(cls, filepath: str | Path | InputFile, mode="r+", **kwargs) -> Driver:
+        """
+        Run application specified by 'filepath' ui.json file.
+
+        :param filepath: Path to valid ui.json file for the application driver.
+        :param kwargs: Additional keyword arguments for InputFile read_ui_json.
+        """
+
+        ifile = (
+            cls.read_ui_json(filepath, **kwargs)
+            if isinstance(filepath, str | Path)
+            else filepath
+        )
+
+        if not isinstance(ifile, InputFile):
+            raise TypeError("Input file must be a string path or an InputFile object.")
 
         with ifile.geoh5.open(mode=mode):
             try: