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28 changes: 14 additions & 14 deletions conda-dubii-3-stat-R.yml
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name: dubii_r_2019

channels:
- r
- conda-forge
- bioconda/label/gcc7 # To get R > 3.5
- bioconda
- default
- lcantini

dependencies:

## RCRAN packages
- r::r-base >=3.5,< 3.6
- r::r-knitr # For R markdown
- r::r-kableextra # To export nice-looking tables in the R markdown reports
- r::r-formattable # nice formating of tables in reports
- r::r-roxygen2 # To build package documentation
- r::r-yaml # Required to load Yaml config files
- r::r-e1071 # for SVM
- r::r-randomforest # Supervised classification
- r::r-tidyverse # Collection of R packages designed for data science (ggplot2, tidyr, dplyr, readr, purr, tibble, strigr, forcats)
- r::r-FactoMineR # For PCA
- r::r-factoextra # To plot PCA output
- r::r-cowplot # Add-on to ggplot2 for enhance design
- r::r-corrplot # Graphical display of a correlation matrix, confidence interval
- conda-forge::r-knitr # For R markdown
- conda-forge::r-kableextra # To export nice-looking tables in the R markdown reports
- conda-forge::r-formattable # nice formating of tables in reports
- conda-forge::r-roxygen2 # To build package documentation
- conda-forge::r-yaml # Required to load Yaml config files
- conda-forge::r-e1071 # for SVM
- conda-forge::r-randomforest # Supervised classification
- conda-forge::r-tidyverse # Collection of R packages designed for data science (ggplot2, tidyr, dplyr, readr, purr, tibble, strigr, forcats)
- bioconda::r-factominer # For PCA
- conda-forge::r-factoextra # To plot PCA output
- conda-forge::r-cowplot # Add-on to ggplot2 for enhance design
- conda-forge::r-corrplot # Graphical display of a correlation matrix, confidence interval

## Bioconductor packages
- bioconda::bioconductor-deseq2
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