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680bb1e
Merge branch 'main' of https://github.com/CDCgov/PyRenew
cdc-mitzimorris Sep 15, 2025
2cb876b
update
cdc-mitzimorris Sep 18, 2025
60db8df
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Sep 22, 2025
32a5314
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Oct 5, 2025
d6213f2
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Oct 8, 2025
96f27c9
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Nov 17, 2025
1cb6fa2
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Nov 24, 2025
f62e1e4
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Dec 4, 2025
0c6785d
Merge branch 'main' of github-bf06:CDCgov/PyRenew
cdc-mitzimorris Dec 22, 2025
35bba26
added generic observation processes and unit tests
cdc-mitzimorris Dec 22, 2025
89d7aab
adding tutorials
cdc-mitzimorris Dec 23, 2025
a2e4630
improve test coverage
cdc-mitzimorris Dec 23, 2025
24096bc
improve unit test coverage
cdc-mitzimorris Dec 23, 2025
671d9d0
consistent names: 'subpop' (not site), 'sensor' for site/lab measure…
cdc-mitzimorris Dec 26, 2025
57d2fba
consistent names: 'subpop' (not site), 'sensor' for site/lab measure…
cdc-mitzimorris Dec 26, 2025
7efb524
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 26, 2025
8a7947f
add observation types
cdc-mitzimorris Dec 29, 2025
571ada3
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Dec 29, 2025
6dff8cd
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 29, 2025
48feb75
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Jan 2, 2026
90e1ad0
Update docs/tutorials/observation_processes_counts.qmd
cdc-mitzimorris Jan 2, 2026
c752be5
Update docs/tutorials/observation_processes_counts.qmd
cdc-mitzimorris Jan 2, 2026
f136bd7
Update docs/tutorials/observation_processes_counts.qmd
cdc-mitzimorris Jan 2, 2026
f93d081
Update docs/tutorials/observation_processes_counts.qmd
cdc-mitzimorris Jan 2, 2026
648b2c7
Update docs/tutorials/observation_processes_counts.qmd
cdc-mitzimorris Jan 2, 2026
f56ac89
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Jan 2, 2026
27f0577
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 7, 2026
d9749c7
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 7, 2026
e2a955b
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 7, 2026
d30b391
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 7, 2026
a655f99
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 7, 2026
e37a572
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 7, 2026
3457f62
Update pyrenew/observation/noise.py
cdc-mitzimorris Jan 7, 2026
25e4dd8
Update pyrenew/observation/noise.py
cdc-mitzimorris Jan 7, 2026
60d798c
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Jan 7, 2026
4bd8f2e
change expected to predicted
cdc-mitzimorris Jan 7, 2026
4e429bc
standardize on param name obs for sample method
cdc-mitzimorris Jan 7, 2026
d05249a
standardize sample - all methods must have arg obs
cdc-mitzimorris Jan 7, 2026
613a8f1
in order to use np TruncatedDistribution, change use of Gamma to Trun…
cdc-mitzimorris Jan 7, 2026
910fa70
Remove the provided helper classes for sampling priors (i.e. pyrenew/…
cdc-mitzimorris Jan 7, 2026
7019955
updated observation process measurements per reviewer comments
cdc-mitzimorris Jan 7, 2026
2455242
more unit tests
cdc-mitzimorris Jan 7, 2026
101e401
use plotnine for plots in observation_processes tutorial
cdc-mitzimorris Jan 8, 2026
bd5546f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jan 8, 2026
f3a583d
update observation_processes tutorials to use plotnine
cdc-mitzimorris Jan 9, 2026
d02bed8
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Jan 9, 2026
9306edc
minor tutorials edits
cdc-mitzimorris Jan 9, 2026
d103d0f
change plate management strategy
cdc-mitzimorris Jan 13, 2026
5f9cb34
adding hierarchical latent infections, model builder, and unit tests
cdc-mitzimorris Jan 14, 2026
b2acc98
tutorial - latent hierarchical infections
cdc-mitzimorris Jan 14, 2026
35e57f5
Fix numpydoc validation and typo errors
cdc-mitzimorris Jan 15, 2026
096e3e9
label all code blocks
cdc-mitzimorris Jan 15, 2026
642ad53
site builds with mkdocs
cdc-mitzimorris Jan 15, 2026
f5bbcff
Update docs/tutorials/observation_processes_counts.qmd
cdc-mitzimorris Jan 15, 2026
edd6573
Update docs/tutorials/observation_processes_measurements.qmd
cdc-mitzimorris Jan 15, 2026
c65f74d
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Jan 15, 2026
f97f5c3
user-specified signal name
cdc-mitzimorris Jan 15, 2026
df7d082
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jan 15, 2026
060bf07
lint fix
cdc-mitzimorris Jan 15, 2026
c2c15db
Merge branch 'mem_generic_observations' of github-bf06:CDCgov/PyRenew…
cdc-mitzimorris Jan 15, 2026
9e2621a
merge
cdc-mitzimorris Jan 15, 2026
50cee63
user-specified signal names
cdc-mitzimorris Jan 15, 2026
b639938
more unit tests
cdc-mitzimorris Jan 15, 2026
49e1f34
more unit tests; lint fix
cdc-mitzimorris Jan 15, 2026
8704bfa
dataset data loaders have some tests; don't hold to codecov requirements
cdc-mitzimorris Jan 15, 2026
65d0b95
cleanup dataset loaders
cdc-mitzimorris Jan 15, 2026
e497d6d
collapse code blocks in tutorials
cdc-mitzimorris Jan 16, 2026
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4 changes: 4 additions & 0 deletions docs/tutorials/.pages
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,10 @@ nav:
- getting_started.md
- basic_renewal_model.md
- custom_randomvariables.md
- building_multisignal_models.md
- observation_processes_counts.md
- observation_processes_measurements.md
- latent_hierarchical_infections.md
- hospital_admissions_model.md
- day_of_the_week.md
- periodic_effects.md
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