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Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 24 34

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    40 49

Repositories

Showing 10 of 523 repositories
  • NowcastAutoGP Public

    Combining AutoGP (Gaussian process ensembles with kernel structure discovery) with data revisions

    CDCgov/NowcastAutoGP’s past year of commit activity
    Julia 5 Apache-2.0 0 6 1 Updated Feb 16, 2026
  • CDCgov/ixa-epi-isolation’s past year of commit activity
    Rust 1 Apache-2.0 2 29 3 Updated Feb 16, 2026
  • PyRenew Public

    Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

    CDCgov/PyRenew’s past year of commit activity
    Python 25 Apache-2.0 9 63 6 Updated Feb 16, 2026
  • cran-packages Public

    Searches CRAN for packages that might have been authored or funded by CDC

    CDCgov/cran-packages’s past year of commit activity
    R 2 1 0 0 Updated Feb 16, 2026
  • CDCgov/ixa-congregate-settings-measles’s past year of commit activity
    Rust 1 Apache-2.0 0 0 4 Updated Feb 16, 2026
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 7 8 0 0 Updated Feb 16, 2026
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 93 Apache-2.0 36 9 0 Updated Feb 16, 2026
  • CDCgov/stimulant_opioid_algorithm_medical_codes_R’s past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated Feb 15, 2026
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 4 Apache-2.0 3 0 0 Updated Feb 15, 2026
  • CDCgov/nccdphp-drh-mmria’s past year of commit activity
    C# 2 GPL-3.0 0 0 1 Updated Feb 15, 2026