[PWGHF] runMassFitter: add main() function and missing header, provide Readme

PWGHF/D2H/Macros/CMakeLists_HFInvMassFitter.txt

@@ -0,0 +1,23 @@
+cmake_minimum_required(VERSION 3.10)
+
+project(HFInvMassFitter)
+
+set(HFFITTER_RAPIDJSON_INCLUDE_DIRS "" CACHE STRING "Location of rapidjson include directories")
+
+find_package(ROOT REQUIRED COMPONENTS RooFit RooFitCore)
+
+include_directories(${ROOT_INCLUDE_DIRS} ${CMAKE_SOURCE_DIR} ${HFFITTER_RAPIDJSON_INCLUDE_DIRS})
+
+set(SOURCES
+  HFInvMassFitter.cxx
+  runMassFitter.C
+)
+
+add_executable(runMassFitter ${SOURCES} "HFInvMassFitter.h")
+
+ROOT_GENERATE_DICTIONARY(G__HFInvMassFitter
+  HFInvMassFitter.h LINKDEF HFInvMassFitterLinkDef.h
+  MODULE runMassFitter
+)
+
+target_link_libraries(runMassFitter PRIVATE ${ROOT_LIBRARIES} ROOT::EG ROOT::RooFit ROOT::RooFitCore)

PWGHF/D2H/Macros/HFInvMassFitter.cxx

@@ -1,4 +1,4 @@
 // Copyright 2019-2020 CERN and copyright holders of ALICE O2.
 // See https://alice-o2.web.cern.ch/copyright for details of the copyright holders.
 // All rights not expressly granted are reserved.
 //
@@ -16,6 +16,7 @@
 /// \author Mingyu Zhang <mingyu.zang@cern.ch>
 /// \author Xinye Peng  <xinye.peng@cern.ch>
 /// \author Biao Zhang <biao.zhang@cern.ch>
+/// \author Oleksii Lubynets <oleksii.lubynets@cern.ch>
 
 #include "HFInvMassFitter.h"
 
@@ -33,9 +34,6 @@
 #include <RooPolynomial.h>
 #include <RooRealVar.h>
 #include <RooWorkspace.h>
-
-#include <Rtypes.h>
-#include <RtypesCore.h>
 #include <TColor.h>
 #include <TDatabasePDG.h>
 #include <TLine.h>
@@ -45,6 +43,9 @@
 #include <TStyle.h>
 #include <TVirtualPad.h>
 
+#include <Rtypes.h>
+#include <RtypesCore.h>
+
 #include <array>
 #include <cmath>
 #include <cstring>

PWGHF/D2H/Macros/HFInvMassFitter.h

@@ -16,21 +16,22 @@
 /// \author Mingyu Zhang <mingyu.zang@cern.ch>
 /// \author Xinye Peng  <xinye.peng@cern.ch>
 /// \author Biao Zhang <biao.zhang@cern.ch>
+/// \author Oleksii Lubynets <oleksii.lubynets@cern.ch>
 
 #ifndef PWGHF_D2H_MACROS_HFINVMASSFITTER_H_
 #define PWGHF_D2H_MACROS_HFINVMASSFITTER_H_
 
 #include <RooPlot.h>
 #include <RooRealVar.h>
 #include <RooWorkspace.h>
-#include <Rtypes.h>
-#include <RtypesCore.h>
-
 #include <TF1.h>
 #include <TH1.h>
 #include <TNamed.h>
 #include <TVirtualPad.h>
 
+#include <Rtypes.h>
+#include <RtypesCore.h>
+
 #include <cstdio>
 
 class HFInvMassFitter : public TNamed

PWGHF/D2H/Macros/HFInvMassFitterLinkDef.h

@@ -0,0 +1,31 @@
+// Copyright 2019-2020 CERN and copyright holders of ALICE O2.
+// See https://alice-o2.web.cern.ch/copyright for details of the copyright holders.
+// All rights not expressly granted are reserved.
+//
+// This software is distributed under the terms of the GNU General Public
+// License v3 (GPL Version 3), copied verbatim in the file "COPYING".
+//
+// In applying this license CERN does not waive the privileges and immunities
+// granted to it by virtue of its status as an Intergovernmental Organization
+// or submit itself to any jurisdiction.
+
+/// \file HFInvMassFitterLinkDef.h
+/// \brief HFInvMassFitter dictionary definition file
+///
+/// \author Zhen Zhang <zhenz@cern.ch>
+/// \author Mingyu Zhang <mingyu.zang@cern.ch>
+/// \author Xinye Peng  <xinye.peng@cern.ch>
+/// \author Biao Zhang <biao.zhang@cern.ch>
+/// \author Oleksii Lubynets <oleksii.lubynets@cern.ch>
+
+#ifndef PWGHF_D2H_MACROS_HFINVMASSFITTERLINKDEF_H_
+#define PWGHF_D2H_MACROS_HFINVMASSFITTERLINKDEF_H_
+
+#ifdef __CINT__
+#pragma link off all globals;
+#pragma link off all classes;
+#pragma link off all functions;
+#pragma link C++ class HFInvMassFitter + ;
+#endif
+
+#endif // PWGHF_D2H_MACROS_HFINVMASSFITTERLINKDEF_H_

PWGHF/D2H/Macros/README.md

@@ -0,0 +1,59 @@
+# Invariant-mass fitter
+Invariant-mass fitter is implemented in the class `HFInvMassFitter` (`HFInvMassFitter.cxx/h` files), and its run is executed via `runMassFitter.C` macro.
+Fitter is configured in `config_massfitter.json`.\
+The fitter is **not** a part of O2Physics source code.
+
+## Dependencies
+1. ROOT
+2. RapidJSON. Download the header-only (no compilation needed) RapidJSON library, see the link <https://rapidjson.org>.
+
+If you have O2Physics compilation you do not need to fulfill these dependencies explicitly.
+
+## How to run
+### As a ROOT macro
+The `runMassFitter.C` can be compiled as ROOT macro.
+```bash
+cd path-to-o2physics-src/PWGHF/D2H/Macros
+source path-to-root-install/bin/thisroot.sh
+export ROOT_INCLUDE_PATH=$ROOT_INCLUDE_PATH:path-to-json-include
+root -l -x -b -q "HFInvMassFitter.cxx" "runMassFitter.C(\"config_massfitter.json\")"
+```
+If you have O2Physics compilation and enter into its environment there is no need to set environment variables (skip lines 2-3 above).
+
+### As a CMake project
+It is also possible to compile the fitter as a CMake project or insert it into existing one if any.
+Use the `CMakeLists_HFInvMassFitter.txt` (rename it into `CMakeLists.txt` before usage).\
+Compile the fitter with the following steps:
+```bash
+cd path-to-o2physics-src/PWGHF/D2H/Macros
+mkdir build
+cd build
+source path-to-root-install/bin/thisroot.sh
+cmake -DHFFITTER_RAPIDJSON_INCLUDE_DIRS=path-to-json-include ../
+make
+```
+and run the fitter:
+```bash
+./runMassFitter ../config_massfitter.json
+```
+### Directly from the terminal
+Compile the fitter with the following steps:
+```bash
+cd path-to-o2physics-src/PWGHF/D2H/Macros
+mkdir build
+cd build
+source path-to-root-install/bin/thisroot.sh
+
+# Generate ROOT dictionary:
+rootcling -f G__HFInvMassFitter.cxx -c ../HFInvMassFitter.h ../HFInvMassFitterLinkDef.h
+
+# Compile source code:
+g++ -fPIC -I$(root-config --incdir) -I path-to-json-include -c ../HFInvMassFitter.cxx ../runMassFitter.C G__HFInvMassFitter.cxx
+
+# Link the executable:
+g++ -o runMassFitter HFInvMassFitter.o runMassFitter.o G__HFInvMassFitter.o $(root-config --libs)  -lRooFit -lRooFitCore -lEG
+```
+and run the fitter:
+```bash
+./runMassFitter ../config_massfitter.json
+```

PWGHF/D2H/Macros/runMassFitter.C

@@ -16,12 +16,18 @@
 /// \author Mingyu Zhang <mingyu.zang@cern.ch>
 /// \author Xinye Peng  <xinye.peng@cern.ch>
 /// \author Biao Zhang <biao.zhang@cern.ch>
+/// \author Oleksii Lubynets <oleksii.lubynets@cern.ch>
 
 #if !defined(__CINT__) || defined(__CLING__)
 
 #include "HFInvMassFitter.h"
 
 // if .h file not found, please include your local rapidjson/document.h and rapidjson/filereadstream.h here
+#include <TCanvas.h>
+#include <TDatabasePDG.h>
+#include <TFile.h>
+#include <TH2F.h>
+
 #include <rapidjson/document.h>
 #include <rapidjson/filereadstream.h>
 
@@ -30,10 +36,6 @@
 #include <string> // std::string
 #include <vector> // std::vector
 
-#include <TDatabasePDG.h>
-#include <TFile.h>
-#include <TH2F.h>
-
 #endif
 
 using namespace rapidjson;
@@ -672,3 +674,16 @@ void divideCanvas(TCanvas* canvas, int nSliceVarBins)
     }
   }
 }
+
+int main(int argc, char* argv[])
+{
+  if (argc == 1) {
+    throw std::runtime_error("Not enough arguments. Please use\n./runMassFitter configFileName");
+  }
+
+  const std::string configFileName = argv[1];
+
+  runMassFitter(configFileName);
+
+  return 0;
+}