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1. genomepy genomepy Public

   genes and genomes at your fingertips

   Python 411 41

2. gimmemotifs gimmemotifs Public

   Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

   Python 127 35

3. seq2science seq2science Public

   Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

   Python 170 28

4. scepia scepia Public

   Single Cell Epigenome-based Inference of Activity

   Jupyter Notebook 19 2

5. ANANSE ANANSE Public

   Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

   Python 91 16