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UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

29 followers
Madison, WI, USA
https://loci.wisc.edu
@UWMadisonLOCI

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curvelets curvelets Public

Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

MATLAB 28 18
loci-scripts loci-scripts Public

Scripts and macros for LOCI scientific problems

Shell
visbio-imagej visbio-imagej Public

ImageJ plugins for 3D visualization using the VisAD toolkit

Java 1
misc-plugins misc-plugins Public

Miscellaneous ImageJ plugins

Java 2 1
search-image-sc search-image-sc Public

Image.sc search service

Python

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Showing 10 of 136 repositories

qupath-extension-dl-pixel-classifier Public
QuPath extension for deep learning pixel classification with Python training backend

uw-loci/qupath-extension-dl-pixel-classifier’s past year of commit activity

Java 0 Apache-2.0 0 1 5 Updated Apr 30, 2026
qupath-catalog-mikenelson Public
QuPath extensions by Mike Nelson at LOCI

uw-loci/qupath-catalog-mikenelson’s past year of commit activity

Python 0 0 0 0 Updated Apr 30, 2026
qupath-extension-qpsc Public
Java based extension for QuPath allowing control of a microscope through MicroManager

uw-loci/qupath-extension-qpsc’s past year of commit activity

Java 1 Apache-2.0 0 0 5 Updated Apr 30, 2026
microscope_configurations Public
YAML configuration templates for QPSC microscope systems

uw-loci/microscope_configurations’s past year of commit activity

Shell 0 1 0 0 Updated Apr 30, 2026
microscope_command_server Public
Socket-based command server for remote microscope control and QuPath integration

uw-loci/microscope_command_server’s past year of commit activity

Python 0 MIT 1 0 0 Updated Apr 30, 2026
EBEAM_dashboard Public
EBEAM System GUI

uw-loci/EBEAM_dashboard’s past year of commit activity

Python 7 1 7 4 Updated Apr 30, 2026
cellcast Public
A recast of cell segmentation models built on the Burn deep learning framework.

uw-loci/cellcast’s past year of commit activity

Rust 22 MIT 0 4 0 Updated Apr 29, 2026
qupath-extension-wizard-wand Public
Enhanced wand tool for QuPath with scroll-wheel sensitivity, dwell expansion, live smoothing, edge-aware selection, and more.

uw-loci/qupath-extension-wizard-wand’s past year of commit activity

Java 0 Apache-2.0 0 1 0 Updated Apr 28, 2026
qupath-extension-ppm Public
Polarized light microscopy (PPM) modality extension for QuPath/QPSC

uw-loci/qupath-extension-ppm’s past year of commit activity

Java 0 Apache-2.0 0 0 0 Updated Apr 28, 2026
qupath-extension-image-export-toolkit Public
QuIET - QuPath Image Export Toolkit: batch export images for ML training and analysis

uw-loci/qupath-extension-image-export-toolkit’s past year of commit activity

Java 3 Apache-2.0 0 1 0 Updated Apr 28, 2026

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