A Framework for IMS-MS Raw Data Processing written in Rust and Python.
Collisional cross-section prediction for modified and multiconformational peptides
The repository for Targeted Feature Detection and Extraction (TFD/E).
prototype machine-learning solutions for high-throughput MS with ease
Python package for parsing Bruker timsTOF data with centroiding and noise filtering
Beta-DIA is a partially open-source, free-to-use Python software that provides comprehensive peptide/protein identification and accurate quantification results for single-shot diaPASEF data.
A GUI to convert Bruker Raw files (.d) to an .ms2 file format
ZIGGY: The Proteomics Rockstar. Mass spec QC and visualization for Bruker timsTOF and Thermo Orbitrap. Sneaky Peaky ion comparison, MIA mobility library, experimental spectra, Landscape Viewer, auto instrument detection. Built on STAN by Brett Phinney. Proteomics that sparks joy.
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