Learning Universal Representations of Intermolecular Interactions with ATOMICA
Nucleic and amino acid primitive types
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
An analysis of a new experimentally-derived nucleic acid binding chemical library
使用 OCR + 正则表达式实现核酸检测截图的自动校验，复现复旦大学博士生的代码
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Using data from PDBePISA with the convenience of Python and Jupyter.
🧬🦠🧪 [research][wip] Library for working with DNA, RNA, and etc acids
Analysis workflow for smallRNA sequenced data
Similarity Score Matrix and HeatMap for Nucleic and Amino acid K-mers
A Generalized Algorithm for Coarse-Graining Molecular Dynamics Simulations with Boltzmann parametrization
Geometry faithful 2D RNA visualization
Python application to compare ssNa secondary structures
Construct atomistic (AA) model from Three-Interaction-Site (TIS) coarse-grained model of RNA/DNA
A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.
AnnotationDb for post-transcriptional modifications (Mmusculus.mm10)
Remove duplicated protein/nucleic acid sequences, keeping the first occurrence.
Origin of LIFE Research Project.
Evaluation of ligand based methods applied to RNA and DNA targets
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