This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

Python Programming for Biologists

A Gentle Introduction to R, RStudio, and visualization

Training materials for Prism 8

The goal of this repository is to provide a series of course materials that is used for online seminars to introduce modern data science practice using the R language.

The goal of this repository is to provide a series of course materials that is used for online seminars to introduce R programming.

RML Introduction to Structural Biology

An introduction to NGS sequencing, including an overview of methods, quality control checks, preprocessing, and basic manipulation and mapping of the data.

Example workflow using LOCUS to identify viral sequences in bulk metagenomic data

RNAseq workshop courses and materials

Introductory practical training on preprocessing and QC of RNA Seq data

A general introduction for biologists on scRNAseq, with a focus on the difference from bulk RNA-seq

Introductory notes on using Geneious (Biomatters) at NIAID

Training materials for Statistical Testing

Training Materials for Survey Data Analysis in R (Exposure from NHANES)

Introduction to Human Next Generation Sequencing Projects and GWAS analysis offered to ACE Mali students. GWAS demo utilizing PLinK, a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses.

Training: Alphafold Protein Structure Prediction with Chimera X. Tutorial on using Chimera X for AlphaFold Protein Structure. It starts by showing how search and navigate the database PDB for relevant structural data.

Intro to Deep Learning Course Materials

Training materials for UNIX course