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60 changes: 55 additions & 5 deletions src/labcore/data/datagen.py
Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,7 @@
@dataclass
class DataGen(ABC):
noise_std: float = 1.0
imaginary: bool = False

@staticmethod
@abstractmethod
Expand All @@ -53,12 +54,15 @@ def generate(self, coordinates: NDArray[Any], **kwargs: Any) -> NDArray[Any]:
params = asdict(self)
params.update(kwargs)
noise_std = params.pop("noise_std")
imaginary = params.pop("imaginary")

one_d = coordinates.ndim == 1
coordinates = np.atleast_2d(coordinates)
model_outputs = np.array(
[
self.model(coords, **params) + self.noise(coords, noise_std)
self.model(coords, **params)
+ self.noise(coords, noise_std)
+ (1j * self.noise(coords, noise_std) if imaginary else 0)
for coords in coordinates
]
)
Expand All @@ -69,11 +73,12 @@ def generate(self, coordinates: NDArray[Any], **kwargs: Any) -> NDArray[Any]:

@staticmethod
def noise(coordinates: NDArray[Any], std: float) -> NDArray[Any]:
return np.random.normal(scale=std, size=len(coordinates))
n = len(coordinates)
return np.random.normal(scale=std, size=n)


@dataclass
class ExponentialDataGen(DataGen):
class Exponential(DataGen):
base: float = np.e

@staticmethod
Expand All @@ -82,7 +87,7 @@ def model(coordinates: NDArray[Any], base: float) -> NDArray[Any]:


@dataclass
class SineDataGen(DataGen):
class Sine(DataGen):
A: float = 1
f: float = 1
phi: float = 0
Expand All @@ -96,7 +101,7 @@ def model(


@dataclass
class GaussianDataGen(DataGen):
class Gaussian(DataGen):
x0: float = 0
sigma: float = 1
A: float = 1
Expand All @@ -107,3 +112,48 @@ def model(
coordinates: NDArray[Any], x0: float, sigma: float, A: float, of: float
) -> NDArray[Any]:
return A * np.exp(-((coordinates - x0) ** 2) / (2 * sigma**2)) + of


@dataclass
class ExponentialDecay(DataGen):
A: float = 1
tau: float = 1
of: float = 0

@staticmethod
def model(
coordinates: NDArray[Any], A: float, tau: float, of: float
) -> NDArray[Any]:
return A * np.exp(-coordinates / tau) + of


@dataclass
class ExponentialDecayingSine(DataGen):
A: float = 1
f: float = 1
phi: float = 0
tau: float = 1
of: float = 0

@staticmethod
def model(
coordinates: NDArray[Any], A: float, f: float, phi: float, tau: float, of: float
) -> NDArray[Any]:
return (
A * np.exp(-coordinates / tau) * np.sin(2 * np.pi * f * coordinates + phi)
+ of
)


@dataclass
class Lorentzian(DataGen):
A: float = 1
x0: float = 0
gamma: float = 1
of: float = 0

@staticmethod
def model(
coordinates: NDArray[Any], A: float, x0: float, gamma: float, of: float
) -> NDArray[Any]:
return A * (gamma**2) / ((coordinates - x0) ** 2 + gamma**2) + of
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