MCP Codebase Reasoning Engine

A local Model Context Protocol (MCP) server that allows LLM clients (such as Claude Desktop) to explore, understand, and reason about an entire codebase using structured tools.

This project works entirely on your local machine and is suitable for private, unpushed, or confidential repositories.

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🚀 Why this project?

LLMs struggle with real-world codebases because:

• the full project rarely fits into context
• private/local code cannot be uploaded
• understanding requires exploration, not dumping files

This MCP server solves that by allowing an LLM to:

• discover files dynamically
• search across the codebase
• read files on demand
• build understanding incrementally

All communication happens via MCP tool calls.

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🧠 High-Level Architecture

LLM Client (Claude Desktop)
        ↓
Model Context Protocol (MCP)
        ↓
Codebase Reasoning Engine (this server)
        ↓
Local Codebase (any folder on your system)

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✨ Features

• MCP-compliant server
• Works with Claude Desktop, Autonomous AI Agents
• Codebase-wide file discovery
• Text search across files
• File content inspection
• Local-first (no cloud dependency)
• Fast, reproducible setup using uv

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📁 Repository Structure

CODEBASE-REASONING-ENGINE/
│
├── main.py                # file having all the mcp tools 
├── sample_codebase/       # put your project/codebase in this folder 
├── pyproject.toml
├── uv.lock
├── README.md
├── .gitignore
└── .python-version

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🧪 Sample Codebase

The sample_codebase/ directory is included only for demonstration and local testing.

The MCP server is not tied to this folder and can be pointed to any codebase on your machine.

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⚙️ Prerequisites

• Python >=3.13
• uv installed

Install uv:

pipx install uv

Verify:

uv --version

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📦 Setup

git clone <your-repo-url>
cd CODEBASE-REASONING-ENGINE
uv init .
uv add fastmcp

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▶️ Run the MCP Server

uv run --with fastmcp fastmcp run main.py

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🧩 Claude Desktop Integration (Windows Example)

uv run fastmcp install claude-desktop main.py

{
  "Codebase_reasoning_engine": {
    "command": "uv",       // replace it with your uv path
    "args": [
      "run",
      "--with",
      "fastmcp",
      "fastmcp",
      "run",
      "/main.py"           // replace this with the path of your main.py file
    ]
  }
}

Restart Claude Desktop after adding this.

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🛣️ Future Enhancements

• Modular tools
• Smarter indexing
• Dependency graphs
• Semantic search

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📜 License

MIT License