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1. stainwarpy stainwarpy Public

   Forked from qbic-pipelines/stainwarpy

   stainwarpy is a command-line tool and a Python package for registering H&E stained and multiplexed tissue images. It provides a feature based registration pipeline.

   Python

2. stainsegmy stainsegmy Public

   Forked from qbic-pipelines/stainsegmy

   Command-line tool for performing semantic segmentation on H&E-stained histopathology images using deep learning models.

   Python

3. he2multi-reg he2multi-reg Public

   he2multi-reg is a command-line tool and a Python package for registering H&E stained and multiplexed tissue images. It provides a feature based and intensity based registration pipeline.

   Python

4. CRC-HnE-Segmentation-Training CRC-HnE-Segmentation-Training Public

   Forked from qbic-pipelines/CRC-HnE-Segmentation-Training

   Python

5. mawa00006/Benchmarking-protein-structures-predicted-by-AlphaFold-and-RosettaFold mawa00006/Benchmarking-protein-structures-predicted-by-AlphaFold-and-RosettaFold Public

   This project is part of the Structure Bioinformatics SS24 Group Project @Eberhard Karls University Tuebingen by Prof. Dr. Oliver Kohlbacher.

   Python

6. Integration-of-HnE-Staining-and-Highly-Multiplexed-Tissue-Imaging Integration-of-HnE-Staining-and-Highly-Multiplexed-Tissue-Imaging Public

   This repository contains code base for final evaluation plots and figures for the masers' thesis, integrating HnE staining and highly multiplexed tissue imaging through image registration and segme…

   Jupyter Notebook