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Test cases for pydistmesh module #1

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211 changes: 100 additions & 111 deletions pyproject.toml
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Original file line number Diff line number Diff line change
@@ -1,23 +1,15 @@
[build-system]
requires = [
"setuptools>=61.0",
"pybind11>=2.10.0",
"numpy>=2.0.0",
]
requires = ["setuptools>=61.0", "pybind11>=2.10.0", "numpy>=2.0.0"]
build-backend = "setuptools.build_meta"

[project]
name = "pydistmesh"
version = "0.0.1"
authors = [{name= "Songyuan Cui", email="cui20@illinois.edu"}]
authors = [{ name = "Songyuan Cui", email = "cui20@illinois.edu" }]
description = "A Python implemenetation of the distmesh algorithm"
readme = "README.md"
requires-python = ">=3.9"
dependencies = [
"scipy>=1.13.0",
"matplotlib>=3.8.0",
"PyMCubes>=0.1.0",
]
dependencies = ["scipy>=1.13.0", "matplotlib>=3.8.0", "PyMCubes>=0.1.0"]

[tool.setuptools]
packages = ["pydistmesh"]
Expand All @@ -27,49 +19,41 @@ packages = ["pydistmesh"]


[project.optional-dependencies]
dev = [
"mypy",
"pre-commit",
]
test = [
"pytest",
"tox"
]
linter = [
"ruff"
]
dev = ["mypy", "pre-commit"]
test = ["pytest", "tox"]
linter = ["ruff"]

[tool.ruff]
# Exclude a variety of commonly ignored directories.
exclude = [
".bzr",
".direnv",
".eggs",
".git",
".git-rewrite",
".hg",
".ipynb_checkpoints",
".mypy_cache",
".nox",
".pants.d",
".pyenv",
".pytest_cache",
".pytype",
".ruff_cache",
".svn",
".tox",
".venv",
".vscode",
"__pypackages__",
"_build",
"buck-out",
"build",
"dist",
"node_modules",
"site-packages",
"venv",
"setup.py",
"examples/"
".bzr",
".direnv",
".eggs",
".git",
".git-rewrite",
".hg",
".ipynb_checkpoints",
".mypy_cache",
".nox",
".pants.d",
".pyenv",
".pytest_cache",
".pytype",
".ruff_cache",
".svn",
".tox",
".venv",
".vscode",
"__pypackages__",
"_build",
"buck-out",
"build",
"dist",
"node_modules",
"site-packages",
"venv",
"setup.py",
"examples/",
]

# Same as Black.
Expand All @@ -80,68 +64,68 @@ target-version = "py39"

[tool.ruff.lint]
select = [
"A", # Builtins
"ANN", # Annotations
"ARG", # Unused arguments
"B", # Bugbear
"BLE", # Blind except
"C4", # Comprehensions
"C90", # mccabe
"COM", # Commas
"D1", # Undocumented public elements
"D2", # Docstring conventions
"D3", # Triple double quotes
"D4", # Docstring text format
"DTZ", # Datetimes
"EM", # Error messages
"ERA", # Commented-out code
"EXE", # Executable
"F", # Pyflakes
"FA", # __future__ annotations
"FLY", # F-strings
# "FURB", # Refurb
"G", # Logging format
"I", # Isort
"ICN", # Import conventions
"INP", # Disallow PEP-420 (Implicit namespace packages)
"INT", # gettext
"ISC", # Implicit str concat
# "LOG", # Logging
"N", # PEP-8 Naming
"NPY", # Numpy
"PERF", # Unnecessary performance costs
"PGH", # Pygrep hooks
"PIE", # Unnecessary code
"PL", # Pylint
"PT", # Pytest
"PTH", # Use Pathlib
"PYI", # Stub files
"Q", # Quotes
"RET", # Return
"RUF", # Ruff
"RSE", # Raise
"S", # Bandit
"SIM", # Code simplification
"SLF", # Private member access
"SLOT", # __slots__
"T10", # Debugger
"T20", # Print
"TCH", # Type checking
"TID", # Tidy imports
"TRY", # Exception handling
"UP", # Pyupgrade
"W", # Warnings
"YTT", # sys.version
"A", # Builtins
"ANN", # Annotations
"ARG", # Unused arguments
"B", # Bugbear
"BLE", # Blind except
"C4", # Comprehensions
"C90", # mccabe
"COM", # Commas
"D1", # Undocumented public elements
"D2", # Docstring conventions
"D3", # Triple double quotes
"D4", # Docstring text format
"DTZ", # Datetimes
"EM", # Error messages
"ERA", # Commented-out code
"EXE", # Executable
"F", # Pyflakes
"FA", # __future__ annotations
"FLY", # F-strings
# "FURB", # Refurb
"G", # Logging format
"I", # Isort
"ICN", # Import conventions
"INP", # Disallow PEP-420 (Implicit namespace packages)
"INT", # gettext
"ISC", # Implicit str concat
# "LOG", # Logging
"N", # PEP-8 Naming
"NPY", # Numpy
"PERF", # Unnecessary performance costs
"PGH", # Pygrep hooks
"PIE", # Unnecessary code
"PL", # Pylint
"PT", # Pytest
"PTH", # Use Pathlib
"PYI", # Stub files
"Q", # Quotes
"RET", # Return
"RUF", # Ruff
"RSE", # Raise
"S", # Bandit
"SIM", # Code simplification
"SLF", # Private member access
"SLOT", # __slots__
"T10", # Debugger
"T20", # Print
"TCH", # Type checking
"TID", # Tidy imports
"TRY", # Exception handling
"UP", # Pyupgrade
"W", # Warnings
"YTT", # sys.version
]
ignore = [
"D203", # One blank line before class docstring
"D212", # Multi-line summary first line
"PLR0913", # Too many arguments
"Q000", # Single quotes found but double quotes preferred
"COM812", # Missing trailing comma
"ISC001", # Single line implicit string concatenation
"PGH003", # Blanket type ignore
"PLR0915", # Too many statements
"D203", # One blank line before class docstring
"D212", # Multi-line summary first line
"PLR0913", # Too many arguments
"Q000", # Single quotes found but double quotes preferred
"COM812", # Missing trailing comma
"ISC001", # Single line implicit string concatenation
"PGH003", # Blanket type ignore
"PLR0915", # Too many statements
]

fixable = ["ALL"]
Expand All @@ -155,4 +139,9 @@ indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "auto"
docstring-code-format = false
docstring-code-line-length = "dynamic"
docstring-code-line-length = "dynamic"

[tool.pytest.ini_options]
minversion = "6.0"
addopts = "-ra -q"
testpaths = ["tests"]