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squid-protocol/README.md

Hi, I'm Joe Esquibel, Ph.D. 👋

Deep-Tech Systems Architect | Edge Computing & Heuristic Analysis

For the past 10 years, I have served as a tenured Biology Professor and researcher with a Ph.D. in Pharmacology. Today, I am transitioning my career from academia into deep-tech systems architecture.

It turns out that the strict, methodical isolation of variables required in wet-lab assay development translates flawlessly into software engineering. I combine a decade of rigorous scientific methodology with deep-stack engineering to design and deploy "unbrickable" architectures for environments with lethal constraints—from high-noise industrial manufacturing floors to legacy enterprise codebases.

I don't just consume APIs; I author the foundational communication protocols, heuristic engines, and state machines that allow hardware and software to interface securely at scale.


🏗️ The Infrastructure Trinity

My core architectural work spans three distinct domains of systems engineering: Physical Control, Abstract Mapping, and Simulated Optimization.

1. SCADA & Edge Computing (The Physical)

meow-turtle | Distributed SMP Sorting Architecture An industrial-grade, distributed SCADA framework designed for hard real-time physical sorting.

  • 🎥 Watch the Hardware Demo on YouTube
  • The Architecture: Utilizes a dual-core Symmetric Multiprocessing (SMP) architecture on bare-metal RP2350 microcontrollers.
  • The Protocol: Driven by MTIP, a custom fault-tolerant, Layer-7 asynchronous serial protocol I authored for high-noise RS485 environments. Features deterministic packet framing (<HEX:CRC>), CRC-16-CCITT cryptographic verification, and priority transmit queues for microsecond E-Stop interrupts.
  • The Reliability: Features "Death Gasp" brownout telemetry, E-Stop hardware interlocks, and an atomic Over-The-Air (OTA) firmware staging system with a zero-dependency Ghost Mode rescue kernel to prevent remote bricking.

2. Static Analysis & Big Data (The Analytical)

gitgalaxy | AST-Free Heuristic Knowledge Graph A high-velocity static analysis engine built for extreme-scale enterprise intelligence and technical debt mapping.

  • 🎥 Watch the WebGPU Visualization on YouTube
  • The Architecture: Bypasses traditional Abstract Syntax Trees (ASTs) and LLMs entirely, utilizing a custom heuristic scanning engine to parse and map monolithic architectures (including legacy COBOL) across 50+ languages.
  • The Visualization: Renders massive, unstructured codebase relationships into actionable 3D risk maps using custom WebGL/WebGPU pipelines.
  • The Impact: Deployed as an incident response and M&A technical due diligence tool to generate zero-trust SBOMs and expose hidden dependency chains.

3. Machine Learning & Simulation (The Simulated)

sorting_evolution_algorithm | Predictive Physics Simulation A high-compute testing environment that evolves optimal mechanical solutions before physical deployment.

  • 🎥 Watch the Evolutionary Algorithm Demo on YouTube
  • The Architecture: Couples a custom Genetic Algorithm (GA) with a headless Matter.js physics engine.
  • The Compute: Offloads intense evolutionary calculations into multi-threaded Web Workers, allowing for rapid generation and mutation of mechanical sorting tolerances based on physical fitness scores.

⚙️ Hardware UX & Educational Tools

  • No_number_clock: A mechanical assistive technology device translating abstract time into physical distance using C++ and micro-stepping motor control. 🎥 Watch the Build on YouTube
  • math_facts: A zero-wait, gamified analytics dashboard built with Python, Flask, and Plotly.js to track real-time learning metrics.

🚀 Currently Engineering

  • Micro-MTIP Framework: Extracting the Layer-7 asynchronous SCADA protocol utilized in meow-turtle into a standalone, open-source routing framework for edge-compute developers.

📫 Let's Connect

I am currently pivoting my systems engineering expertise into the industrial automation, DevSecOps, and deep-tech sectors. If your engineering team is tackling complex edge-compute integrations, legacy architecture mapping, or requires fault-tolerant systems design, let's talk!

Pinned Loading

  1. gitgalaxy gitgalaxy Public

    An AST-free, LLM-free heuristic knowledge graph engine for deep repository intelligence. Map, secure, and modernize enterprise codebases across 50+ languages at extreme velocity

    Python 21