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Add obstore to test suite

Status: Open.

#317 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 24, 2026

·  

0.2.0

Add icechunk and obstore as optional deps

Status: Open.

#316 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 24, 2026

·  

0.2.0

query --list-samples includes null sample IDs

bugSomething isn't workingSomething isn't working

Status: Open.

#311 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 23, 2026

Plink output does not mask null samples

Status: Open.

Bug

#310 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 23, 2026

Test warnings

Status: Open.

#302 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 21, 2026

bare flag identifier as the whole predicate

Status: Open.

Bug

#300 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 20, 2026

Initial VczReader API

Status: Open.

#291 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 17, 2026

·  

0.2.0

Complement-targeted regions fail on Windows + Python 3.11 (pyranges/sorted_nearest dtype bug)

Status: Open.

#290 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 17, 2026

Bug in VCF output when selected samples have all missing GTs.

bugSomething isn't workingSomething isn't working

Status: Open.

#289 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 16, 2026

Test wheel building

Status: Open.

#274 In sgkit-dev/vcztools;

· jeromekelleher opened on Apr 1, 2026

Document how to use vcztools with icechunk storage

Status: Open.

#257 In sgkit-dev/vcztools;

· tomwhite opened on Feb 4, 2026

Error message when decompressing .vcz data with vcztools

Status: Open.

#245 In sgkit-dev/vcztools;

· browning-lab opened on Dec 15, 2025