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Integration Testing CI Test Failure on python 3.14 with prerelease dependencies

Status: Open.

#4121 In scverse/scanpy;

· scverse-issue-creator opened on May 13, 2026

Integration Testing CI Test Failure on python 3.12

Status: Open.

#4120 In scverse/scanpy;

· scverse-issue-creator opened on May 13, 2026

Integration Testing CI Test Failure on python 3.14

Status: Open.

#4119 In scverse/scanpy;

· scverse-issue-creator opened on May 13, 2026

wilcoxon DE, vs_all_perturbed

Status: Open.

Enhancement

#4114 In scverse/scanpy;

· zboldyga opened on May 8, 2026

Investigate networkit (for leiden implementation)

Status: Open.

Enhancement

#4110 In scverse/scanpy;

· ilan-gold opened on May 7, 2026

Inconsistency in graphs used by sc.tl.leiden and sc.metrics.modularity leads to modularity mismatch

Status: Open.

Bug

#4099 In scverse/scanpy;

· jpintar opened on May 3, 2026

Scrublet failure using batch_key

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

Bug

#4098 In scverse/scanpy;

· 40YTGan opened on May 1, 2026

race condition breaks parallel run of sc.datasets functions (e.g. in tests)

Area - DatasetsRelated to sc.datasets moduleRelated to sc.datasets module

Status: Open.

Bug

#4097 In scverse/scanpy;

· flying-sheep opened on Apr 28, 2026

·  

1.12.2

Automatically using Dask for large datasets when necessary

Area - Out of core 💾Working with on disk dataWorking with on disk data

Status: Open.

Enhancement

#4095 In scverse/scanpy;

· Zethson opened on Apr 28, 2026

Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

Status: Open.

#4089 In scverse/scanpy;

· scverse-issue-creator opened on Apr 25, 2026

sc.get.aggregate memory leak for Dask array

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

Bug

#4074 In scverse/scanpy;

· mumichae opened on Apr 18, 2026

Add layer parameter to read_10x_* functions

Area - IOReading and writingReading and writing

Status: Open.

Enhancement

#4071 In scverse/scanpy;

· flying-sheep opened on Apr 17, 2026

·  

1.13.0