Issues · scverse/scanpy · GitHub

Dask support
#2578 · flying-sheep opened on Jul 28, 2023
3

Labels Milestones New issue

wilcoxon DE, vs_all_perturbed

#4114

· zboldyga opened

on May 8, 2026

Investigate `networkit` (for `leiden` implementation)

#4110

· ilan-gold opened

on May 7, 2026

Inconsistency in graphs used by `sc.tl.leiden` and `sc.metrics.modularity` leads to modularity mismatch

#4099

· jpintar opened

on May 3, 2026

Scrublet failure using `batch_key`

#4098

· 40YTGan opened

on May 1, 2026

race condition breaks parallel run of `sc.datasets` functions (e.g. in tests)

Area - Datasets

#4097

· flying-sheep opened

on Apr 28, 2026

·

Automatically using Dask for large datasets when necessary

Area - Out of core 💾

#4095

· Zethson opened

on Apr 28, 2026

Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

#4089

· scverse-issue-creator opened

on Apr 25, 2026

`sc.get.aggregate` memory leak for Dask array

#4074

· mumichae opened

on Apr 18, 2026

Add `layer` parameter to `read_10x_*` functions

#4071

· flying-sheep opened

on Apr 17, 2026

·

modernize datasets

Area - Datasets

#4044

· flying-sheep opened

on Apr 9, 2026

Integration with `illico`

Area – External

Area – Performance 🐌

#4012

· ilan-gold opened

on Mar 25, 2026

Opinionated defaults for 2.0

#4008

· flying-sheep opened

on Mar 23, 2026