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feat: pre release job #27

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feat: pre release job #27

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0dd7905
feat: pre release job
ilan-gold Jan 23, 2026
ff1c4ed
fix: ah there's else!
ilan-gold Jan 23, 2026
ef228d6
oops no overrides unless pre
ilan-gold Jan 23, 2026
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5 changes: 4 additions & 1 deletion .github/workflows/integration-test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,7 @@ jobs:
fail-fast: false
matrix:
python: ["3.12", "3.13"]
is_pre: [true, false]
package:
# extras should be a comma seperated list of strings, like `extras: "lazy,accelerated"`
# The 'test' extra is always installed
Expand All @@ -31,6 +32,8 @@ jobs:
- {name: "pertpy", extras: "de"}
- {name: "decoupler", extras: ""}
- {name: "SnapATAC2", extras: ""}
exclude:
- { python: 3.12, is_pre: true }

defaults:
run:
Expand Down Expand Up @@ -89,7 +92,7 @@ jobs:
EXTRAS="test"
fi
fi
uv pip install --compile --system ".[$EXTRAS]" git+https://github.com/scverse/anndata -c ../integration-testing/constraints.txt $GROUP -v
uv pip install ${{ matrix.is_pre && '--prerelease allow' || '' }} --compile --system ".[$EXTRAS]" git+https://github.com/scverse/anndata -c ../integration-testing/constraints.txt ${{ matrix.is_pre && '--override ../integration-testing/overrides.txt' || ''}} $GROUP -v
working-directory: ${{ matrix.package.name }}

- name: Set failure type for install
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1 change: 1 addition & 0 deletions overrides.txt
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@@ -0,0 +1 @@
pandas>=3
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