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Invivo#41

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arnaudbore merged 16 commits into
scilus:mainfrom
EliseCos:invivo
May 25, 2026
Merged

Invivo#41
arnaudbore merged 16 commits into
scilus:mainfrom
EliseCos:invivo

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@EliseCos
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A few comments to answer but otherwise LGTM !

Comment thread modules/local/mouse/brainextraction/main.nf Outdated
Comment thread modules/local/mouse/brainextraction/main.nf Outdated
Comment thread modules/local/mouse/brainextraction/main.nf Outdated
Comment thread modules/local/mouse/convertbet/main.nf Outdated
cat <<-END_VERSIONS > versions.yml
"${task.process}":
scilpy: \$(uv pip -q -n list | grep scilpy | tr -s ' ' | cut -d' ' -f2)
fsl: \$(flirt -version 2>&1 | sed -n 's/FLIRT version \\([0-9.]\\+\\)/\\1/p')
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missing ants

@arnaudbore arnaudbore merged commit 96738bd into scilus:main May 25, 2026
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2 participants