Skip to content

Pull requests: samtools/htslib

New pull request New
26 Open 1,197 Closed
26 Open 1,197 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add multi-region iterator support for tabix
#1997 opened Apr 6, 2026 by HeyangQin Loading…
4 tasks done
1
Ensure indirect function calls have the correct type.
#1994 opened Mar 30, 2026 by daviesrob Member Loading…
@jkbonfield
2
Add API functions to parse and format SEQ and QUAL fields
#1974 opened Nov 26, 2025 by jmarshall Member Loading…
@daviesrob
4
hts wide maxdepth limit check
#1965 opened Oct 30, 2025 by vasudeva8 Contributor • Draft
1
@whitwham
ISA-L compression support evaluation.
#1908 opened Apr 29, 2025 by rhpvorderman Contributor • Draft
2
Add VCF/BCF support for POS=0 coordinate
#1573 opened Mar 1, 2023 by pd3 Member Loading…
1
5
Proposal to add hts_log callback function and hts_log_set_logger()
#1414 opened Mar 23, 2022 by jmarshall Member • Draft
@daviesrob
2
Progress and Cancelation for Indexing
#1379 opened Jan 12, 2022 by BickfordA Contributor Loading…
11
Iteration over SAM header lines and header expression filtering
#1351 opened Nov 2, 2021 by jmarshall Member • Draft
@whitwham
2
Improve cross-compilation support [once autoconf 2.70 is widespread]
#1199 opened Jan 4, 2021 by jmarshall Member • Draft
2
improve compatibility for c++
#1191 opened Dec 11, 2020 by s-wakaba Loading…
6
Update to the depth filtering for mpileup.
#1084 opened Jun 15, 2020 by jkbonfield Contributor Loading…
4
Speed up of VCF parsing / writing with FORMAT fields.
#1081 opened May 28, 2020 by jkbonfield Contributor Loading…
4
Add method sam_open_write
#1055 opened Apr 6, 2020 by valeriuo Contributor Loading…
14
Fixes involving CRAM and header API for long references.
#976 opened Nov 15, 2019 by jkbonfield Contributor Loading…
2
sam_format1 : replace if/then with switch/case
#704 opened May 24, 2018 by lindenb Loading…
1
Add mmap hfile backend
#690 opened Apr 23, 2018 by ThomasHickman Contributor Loading…
12
Provide more informative error message when encountering unexpected n…
#689 opened Apr 22, 2018 by cinquin Contributor Loading…
2
Add hts_open_cb() interface which allows callback function used as data source
#647 opened Jan 10, 2018 by 38 Loading…
12
Abstract ref_to_m5 from cram_io
#589 opened Sep 8, 2017 by ThomasHickman Contributor Loading…
@jkbonfield
37
Added "make dist" and "make distcheck" targets.
#533 opened May 15, 2017 by jkbonfield Contributor Loading…
Add a flexible array member to the bam1_t struct to facilitate a BAM … breaks-ABI
#393 opened Jun 21, 2016 by nathanweeks Contributor Loading…
1
IAM role support enhancement
#362 opened Mar 28, 2016 by jpiper Contributor Loading…
6
[DISCUSS] Add HTS_PARSE_* parsing flags
#260 opened Aug 26, 2015 by jmarshall Member Loading… wishlist
12
for creating indexing file in samtools merge D2: Moderate P2: Desirable
#193 opened Mar 25, 2015 by ionzhangj8 Loading… wishlist
ProTip! Type g i on any issue or pull request to go back to the issue listing page.