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Don't crash on an empty vcf #200

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Don't crash on an empty vcf #200

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3 changes: 2 additions & 1 deletion samplot/samplot_vcf.py
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Original file line number Diff line number Diff line change
Expand Up @@ -958,7 +958,8 @@ def generate_commands(
logger.warning(
"BAMs missing from VCF samples: {}".format(", ".join(missing_bam_samples))
)


var_count = 0 # define it here, in case of zero variants (otherwise it will raise NameError when used below)
for var_count, variant in enumerate(vcf):
translocation_chrom = None
svtype = variant.info.get("SVTYPE", "SV")
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