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adamjohnwright
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Feb 11, 2026
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This PR updates Species.json and the inference code so it no longer creates reference databases for EnsEMBL.
Instead it pulls the EnsEMBL reference databases that already exist in the MySQL release database (derived from gk_central). There are 3 EnsEMBL reference databases that are needed for inference -- main, protist, and fungi.
It also pulls "alternative" reference databases from the release database if it already exists and only creates it if it doesn't exist.