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Rat Genome Database

7 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

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Showing 10 of 153 repositories

rgd-core-library Public
Domain layer and shared components

rat-genome-database/rgd-core-library’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated Apr 20, 2026
themes Public
Wordpress themes

rat-genome-database/themes’s past year of commit activity

PHP 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
rgd-ai-chatbot Public
A Spring Boot application using OpenAI embeddings and PostgreSQL vector store for efficient document retrieval and question answering through RAG (Retrieval Augmented Generation). Enables document uploads, semantic search, and context-aware responses.

rat-genome-database/rgd-ai-chatbot’s past year of commit activity

0 GPL-3.0 0 0 0 Updated Apr 20, 2026
full-record-index-pipeline Public
Precomputes summaries from experiment record data into FULL_RECORD_INDEX table for subsequent use by phenominer tool.

rat-genome-database/full-record-index-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
orthology-paf-pipeline Public
Generate PAF files for Jbrowse2 based on orthology

rat-genome-database/orthology-paf-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
text-mining-tools Public

rat-genome-database/text-mining-tools’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
chromosome-pipeline Public
Load chromosome and cytoband information.

rat-genome-database/chromosome-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
phenotype-annotation-pipeline Public
Phenotype annotation pipeline, for mouse and human genes.

rat-genome-database/phenotype-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026
ctd-disease-annotation-pipeline Public
Load disease annotations to genes based on CTD FTP files.

rat-genome-database/ctd-disease-annotation-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Apr 20, 2026

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