JuiceBox and Juicer Tools docker

This repo holds a small Docker setup for running the Juicer Tools and JuiceBox Hi-C tools.

Juicer Tools is compiled with JCuda 10 with full support to GPU.

What's inside

• Dockerfile builds an image with Java, Juicebox, Juicer Tools and the dependencies it needs to run on Linux.
• LICENSE explains the project is shared under the MIT license.
• This README gives a quick overview for anyone who wants to know what the repo provides.

How to build

Build the Docker image by running the command:

docker build -t juicebox:1.13.01 .

How to launch juicer_tools

Juicer Tools can be run with a custom maximum memory for Java:

docker run --gpus all -e "_JAVA_OPTIONS=-Xmx16g" juicebox:1.13.01 juicer_tools <juicer_tools_command> <arguments>