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7 changes: 4 additions & 3 deletions .github/workflows/buildThirdPartyLibrary.yml
Original file line number Diff line number Diff line change
Expand Up @@ -44,8 +44,9 @@ jobs:
context: CC=aarch64-linux-gnu-gcc CXX=aarch64-linux-gnu-g++
build_type: Release
- name: 'macOS (Intel)'
os: macos-13
os: macos-14
build_type: Release
target_arch: " -DTARGET_ARCHITECTURE=Intel"
- name: 'macOS (ARM)'
os: macos-14
build_type: Release
Expand Down Expand Up @@ -91,13 +92,13 @@ jobs:
run: |
mkdir build
cd build
${{ matrix.context }} cmake -G Ninja -DBUILD_TYPE=${{ matrix.build_type }} -DONLY_BUILD_THIRD_PARTY_LIBRARIES=ON -DPREBUILT_LLVMCLANG=OFF ${{ env.DLLVMCLANG_LLVM_TABLEGEN }} ${{ env.DLLVMCLANG_CLANG_TABLEGEN }} ..
${{ matrix.context }} cmake -G Ninja ${{ matrix.target_arch }} -DBUILD_TYPE=${{ matrix.build_type }} -DONLY_BUILD_THIRD_PARTY_LIBRARIES=ON -DPREBUILT_LLVMCLANG=OFF ${{ env.DLLVMCLANG_LLVM_TABLEGEN }} ${{ env.DLLVMCLANG_CLANG_TABLEGEN }} ..
- name: Configure libOpenCOR (only when NOT building LLVM+Clang)
if: ${{ inputs.third_party_library_name != 'LLVMClang' }}
run: |
mkdir build
cd build
${{ matrix.context }} cmake -G Ninja -DBUILD_TYPE=${{ matrix.build_type }} -DONLY_BUILD_THIRD_PARTY_LIBRARIES=ON -DPREBUILT_${{ inputs.third_party_library_name }}=OFF ..
${{ matrix.context }} cmake -G Ninja ${{ matrix.target_arch }} -DBUILD_TYPE=${{ matrix.build_type }} -DONLY_BUILD_THIRD_PARTY_LIBRARIES=ON -DPREBUILT_${{ inputs.third_party_library_name }}=OFF ..
- name: Upload library artifact
if: ${{ !startsWith(github.ref, 'refs/tags/v') }}
uses: actions/upload-artifact@v4
Expand Down
26 changes: 22 additions & 4 deletions .github/workflows/cd.yml
Original file line number Diff line number Diff line change
Expand Up @@ -48,11 +48,13 @@ jobs:
shared_libs: ON
context: CC=aarch64-linux-gnu-gcc CXX=aarch64-linux-gnu-g++
- name: 'macOS static library (Intel)'
os: macos-13
os: macos-14
shared_libs: OFF
target_arch: " -DTARGET_ARCHITECTURE=Intel"
- name: 'macOS shared library (Intel)'
os: macos-13
os: macos-14
shared_libs: ON
target_arch: " -DTARGET_ARCHITECTURE=Intel"
- name: 'macOS static library (ARM)'
os: macos-14
shared_libs: OFF
Expand Down Expand Up @@ -87,7 +89,7 @@ jobs:
run: |
mkdir build
cd build
${{ matrix.context }} cmake -G Ninja -DBUILD_TYPE=Release -DCODE_ANALYSIS=OFF -DCODE_COVERAGE=OFF -DDOCUMENTATION=OFF -DJAVASCRIPT_BINDINGS=OFF -DMEMORY_CHECKS=OFF -DPYTHON_BINDINGS=OFF -DPYTHON_UNIT_TESTING=OFF -DSHARED_LIBS=${{ matrix.shared_libs }} -DUNIT_TESTING=OFF ..
${{ matrix.context }} cmake -G Ninja ${{ matrix.target_arch }} -DBUILD_TYPE=Release -DCODE_ANALYSIS=OFF -DCODE_COVERAGE=OFF -DDOCUMENTATION=OFF -DJAVASCRIPT_BINDINGS=OFF -DMEMORY_CHECKS=OFF -DPYTHON_BINDINGS=OFF -DPYTHON_UNIT_TESTING=OFF -DSHARED_LIBS=${{ matrix.shared_libs }} -DUNIT_TESTING=OFF ..
- name: Build libOpenCOR
run: |
cd build
Expand All @@ -114,10 +116,21 @@ jobs:
fail-fast: false
matrix:
include:
- name: 'Windows Python wheels'
- name: 'Windows Python wheels (Intel)'
os: windows-2022
arch: amd64
- name: 'Windows Python wheels (ARM)'
os: windows-2022
arch: amd64_arm64
- name: 'Linux Python wheels'
os: ubuntu-22.04
# Note: ideally, we would be able to build our Python wheels for both Intel and ARM, but although there
# is a manylinux_2_34 image for ARM (see
# https://quay.io/repository/pypa/manylinux_2_34_aarch64?tab=tags), it is not supported by
# cibuildwheel. The only way to build Python wheels for ARM is currently through emulation (see
# https://cibuildwheel.pypa.io/en/stable/faq/#emulation), but this doesn't work for us because it
# relies on an old version of Linux while we want one with at least glibc version 2.34. So, for now,
# we are only building our Python wheels for Intel.
- name: 'macOS Python wheels (Intel)'
os: macos-13
- name: 'macOS Python wheels (ARM)'
Expand All @@ -128,12 +141,17 @@ jobs:
- name: Configure MSVC
if: ${{ runner.os == 'Windows' }}
uses: ilammy/msvc-dev-cmd@v1
with:
arch: ${{ matrix.arch }}
- name: Build Python wheels
uses: pypa/cibuildwheel@9c75ea15c2f31a77e6043b80b1b7081372319d85
env:
CIBW_ARCHS: auto64
CIBW_BUILD: 'cp*'
CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=13.0
# Note #1: the value of CIBW_ENVIRONMENT_MACOS must be in sync with that of MACOS_DEPLOYMENT_TARGET in
# CMakelists.txt.
# Note #2: for some reasons, we need to specify the minor version, hence using 13.0 instead of 13.
CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_34
CIBW_SKIP: 'cp36* cp37* cp38* *musllinux*'
- name: Upload Python wheel artifacts
Expand Down
27 changes: 6 additions & 21 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -142,7 +142,7 @@ jobs:
install_uninstall_and_package: ON
context: CC=aarch64-linux-gnu-gcc CXX=aarch64-linux-gnu-g++
- name: 'macOS static library (Intel)'
os: macos-13
os: macos-14
build_type: Release
code_analysis: OFF
code_coverage: OFF
Expand All @@ -155,9 +155,10 @@ jobs:
shared_libs: OFF
unit_testing: ON
target: unit_testing
target_arch: " -DTARGET_ARCHITECTURE=Intel"
install_uninstall_and_package: ON
- name: 'macOS shared library (Intel)'
os: macos-13
os: macos-14
build_type: Release
code_analysis: OFF
code_coverage: OFF
Expand All @@ -170,6 +171,7 @@ jobs:
shared_libs: ON
unit_testing: ON
target: unit_testing
target_arch: " -DTARGET_ARCHITECTURE=Intel"
install_uninstall_and_package: ON
- name: 'macOS static library (ARM)'
os: macos-14
Expand Down Expand Up @@ -246,24 +248,7 @@ jobs:
unit_testing: OFF
target: python_unit_testing
pip_install_test_and_uninstall: ON
- name: 'macOS Python bindings (Intel)'
os: macos-13
build_type: Release
code_analysis: OFF
code_coverage: OFF
documentation: OFF
javascript_bindings: OFF
javascript_unit_testing: OFF
memory_checks: OFF
python_bindings: ON
python_unit_testing: ON
shared_libs: OFF
unit_testing: OFF
context: PATH=/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH
target: python_unit_testing
pip_install_prerequisites: sudo pip3 install cmake scikit-build
pip_install_test_and_uninstall: ON
- name: 'macOS Python bindings (ARM)'
- name: 'macOS Python bindings'
os: macos-14
build_type: Release
code_analysis: OFF
Expand Down Expand Up @@ -460,7 +445,7 @@ jobs:
run: |
mkdir build
cd build
${{ matrix.context }} cmake -G Ninja -DBUILD_TYPE=${{ matrix.build_type }} -DCODE_ANALYSIS=${{ matrix.code_analysis }} -DCODE_COVERAGE=${{ matrix.code_coverage }} -DDOCUMENTATION=${{ matrix.documentation }} -DINSTALL_PREFIX=${{ github.workspace }}/install -DJAVASCRIPT_BINDINGS=${{ matrix.javascript_bindings }} -DJAVASCRIPT_UNIT_TESTING=${{ matrix.javascript_unit_testing }} -DMEMORY_CHECKS=${{ matrix.memory_checks }} -DPYTHON_BINDINGS=${{ matrix.python_bindings }} -DPYTHON_UNIT_TESTING=${{ matrix.python_unit_testing }} -DSHARED_LIBS=${{ matrix.shared_libs }} -DUNIT_TESTING=${{ matrix.unit_testing }} ..
${{ matrix.context }} cmake -G Ninja ${{ matrix.target_arch }} -DBUILD_TYPE=${{ matrix.build_type }} -DCODE_ANALYSIS=${{ matrix.code_analysis }} -DCODE_COVERAGE=${{ matrix.code_coverage }} -DDOCUMENTATION=${{ matrix.documentation }} -DINSTALL_PREFIX=${{ github.workspace }}/install -DJAVASCRIPT_BINDINGS=${{ matrix.javascript_bindings }} -DJAVASCRIPT_UNIT_TESTING=${{ matrix.javascript_unit_testing }} -DMEMORY_CHECKS=${{ matrix.memory_checks }} -DPYTHON_BINDINGS=${{ matrix.python_bindings }} -DPYTHON_UNIT_TESTING=${{ matrix.python_unit_testing }} -DSHARED_LIBS=${{ matrix.shared_libs }} -DUNIT_TESTING=${{ matrix.unit_testing }} ..
- name: Build libOpenCOR
if: ${{ (matrix.unit_testing == 'ON') || (matrix.javascript_unit_testing == 'ON') || (matrix.code_analysis == 'ON') || (matrix.code_coverage == 'ON') || (matrix.memory_checks == 'ON') }}
run: |
Expand Down
10 changes: 8 additions & 2 deletions CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -48,10 +48,16 @@ if(EMSCRIPTEN)

add_subdirectory(src)
else()
# On macOS, deploy on macOS 11 and later.
# On macOS, deploy on macOS 13 and later.
# Note #1: for some reasons, this gets ignored by LLVM+Clang when we try to build it on GitHub Actions using
# macos-13 (Intel) (even when setting the MACOSX_DEPLOYMENT_TARGET environment variable), which is why we
# now always use macos-14 (ARM) (not to mention that it is faster!) and pass -DTARGET_ARCHITECTURE=Intel to
# CMake if we want to build for macOS Intel on GHA.
# Note #2: the value of MACOS_DEPLOYMENT_TARGET must be in sync with that of CIBW_ENVIRONMENT_MACOS in
# .github/workflows/cd.yml.

if(APPLE)
set(MACOS_DEPLOYMENT_TARGET 11)
set(MACOS_DEPLOYMENT_TARGET 13)

if("${CMAKE_OSX_DEPLOYMENT_TARGET}" STREQUAL "")
set(CMAKE_OSX_DEPLOYMENT_TARGET ${MACOS_DEPLOYMENT_TARGET})
Expand Down
6 changes: 6 additions & 0 deletions cmake/packages.cmake
Original file line number Diff line number Diff line change
Expand Up @@ -309,6 +309,12 @@ set(CMAKE_ARGS
${CMAKE_CXX_FLAGS_ARGS}
)

if(APPLE)
list(APPEND CMAKE_ARGS
-DCMAKE_OSX_DEPLOYMENT_TARGET=${CMAKE_OSX_DEPLOYMENT_TARGET}
)
endif()

if(CMAKE_C_COMPILER_LAUNCHER AND CMAKE_CXX_COMPILER_LAUNCHER)
escape_path(${CMAKE_C_COMPILER_LAUNCHER} EP_CMAKE_C_COMPILER_LAUNCHER)
escape_path(${CMAKE_CXX_COMPILER_LAUNCHER} EP_CMAKE_CXX_COMPILER_LAUNCHER)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/LLVMClang/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -47,11 +47,11 @@ if(LIBOPENCOR_PREBUILT_LLVMCLANG)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
d75ac2c3e920f055a9215d9727df6db9fb45cc47)
d0738ed7481fcae143c1f8b52a1ea82ad765d09e)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
9b7bd8151cc47e4b8dbcc0bf60b4aef50cfd95e7)
868de8ec69bb19f2bc229a8a256d5ba3bdd59f54)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/OpenSSL/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -47,11 +47,11 @@ if(LIBOPENCOR_PREBUILT_OPENSSL)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
7660430004c42f49aa94905a4fd1fe22d51a10c8)
61e6dfe3d85f4ce899e07d7c8f998221190f4fb9)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
c3b59ffbbb56ce818b249a94f6efd72228e1aa40)
71f49e49ce8e2612ca0ee1792be3863807f47e86)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/SUNDIALS/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -52,11 +52,11 @@ if(LIBOPENCOR_PREBUILT_SUNDIALS)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
00de19609d78353ad590b6560071dec699edcc34)
6523ab1ab7c8c53b7ae79221e433175db37b24ae)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
be0f52b5aeeb7e938896ae3934bd16d5adfbf5fb)
ecf881d34c3358997dd0fbb11b67bcb69e5b5a70)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libCOMBINE/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -56,11 +56,11 @@ if(LIBOPENCOR_PREBUILT_LIBCOMBINE)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
1e71439b3b4dadd54b74f35446e2436a79bf6334)
182deb702b4f43f897fd9697d262d6bffdd12596)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
741679e4167de3410bc6aeaeeebea59da76768db)
933d48fc63b1b8d306c0cff819f823ea0ab3493b)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libCellML/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -62,11 +62,11 @@ if(LIBOPENCOR_PREBUILT_LIBCELLML)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
d94dbd51fdc4904144b50d039f509635efae6c5f)
f6efb2be7f39b59d10ac0094a0fb7af901aced24)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
d33f0b95475084cb728493a3e9c452b96b43d14c)
4f3d127518a3c856a61f68b117c89c1b127a652d)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libNuML/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -56,11 +56,11 @@ if(LIBOPENCOR_PREBUILT_LIBNUML)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
f6bdfef08fb2918527e3fc2330c136594dbb66f4)
119bb9ae6a3801c95879df0f68d6723f366296cd)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
bd2bb0b0b1c41c316b80a33ee348713bdaf6e5fe)
5221b52057eaf73d6fdb4196b68b2f1867e0fd9d)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libSBML/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -56,11 +56,11 @@ if(LIBOPENCOR_PREBUILT_LIBSBML)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
abc0193d862fc3205f48d7b1aadd96c8f6ff4b8e)
a9237452fda3f5a3edc94baa2da8ca6b8e6ecc0a)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
5b0670ffd48d394bed0840614446625bef597691)
582ee27a38e0fd8864f2fc41f30afd37d4d3db3d)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libSEDML/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -56,11 +56,11 @@ if(LIBOPENCOR_PREBUILT_LIBSEDML)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
a06039f8a66e2878889028d437016520a1b75a2f)
2ae5855a74d5fc4ebb3bc4de0e882a4edda1c192)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
2a9db5b4b4c725c1ed3b87c5a6c5cb0782070eda)
49decb55fa4716f0fa7e77a1340bf235c015bfbb)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libcurl/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -51,11 +51,11 @@ if(LIBOPENCOR_PREBUILT_LIBCURL)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
8e2e31f33d4100aa7d3144becfc7ca4c42eb6651)
22ed824df4e4c2d726ca5a26cae6fad856f3a17a)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
7ad906ec19f0a2390ee53454b968d793b851975e)
57fb241e372c9ec0fba1a0609a9b66fb1dba9263)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libssh2/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -47,11 +47,11 @@ if(LIBOPENCOR_PREBUILT_LIBSSH2)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
a929aa63b53bb84313efcb018cfa9477e2f1044b)
48f7ce906760b7b84e8687aae93f8cd38522737d)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
f5cae05d61c19d6649d30692bd9e9642473c5f26)
c405224fe0f754765286ceeabb2e237bcee010e3)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/libxml2/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -52,11 +52,11 @@ if(LIBOPENCOR_PREBUILT_LIBXML2)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
8fe7f1506c8f8b97dafbf362c6cce76015d44414)
c3d1140afb1e737f2774b1f0e7efd8029bf89a44)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
77ad06e36d08f38d155c1336d514149cf01dd59c)
1004d818b0d771d04625ed0f18f07cfc3290d609)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/zipper/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -52,11 +52,11 @@ if(LIBOPENCOR_PREBUILT_ZIPPER)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
5286a5dc4f7b39ce0de4d5a4281895f26a2bf1a7)
3975ba9ad6eb073fdb086779d78043bc3b207535)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
7e5f68b711642fc485002eeebc81421c23ae4013)
24c4e46cf73e353968fa33e3f1a0cc845c8d8625)
endif()
else()
if(INTEL_MODE)
Expand Down
4 changes: 2 additions & 2 deletions src/3rdparty/zlib/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -52,11 +52,11 @@ if(LIBOPENCOR_PREBUILT_ZLIB)
if(INTEL_MODE)
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
ea7937a62c9a9fb92362ca8ef2a40088f30a9499)
cd7e33ccbfcae378c6fc4be1372a77ebb645e80a)
else()
retrieve_package(${PACKAGE_NAME} ${PACKAGE_VERSION}
${PACKAGE_REPOSITORY} ${RELEASE_TAG}
d6ebf32cdd8ec89b4c15223116e8c8b2a6fd3d68)
637818076b3144913bdf8ba35fd425ff616bdd2e)
endif()
else()
if(INTEL_MODE)
Expand Down
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