Update rtfd conf

.readthedocs.yml

@@ -0,0 +1,13 @@
+version: 2
+
+build:
+  os: "ubuntu-24.04"
+  tools:
+    python: "miniconda3-3.12-24.9"
+
+conda:
+  environment: conda/environment.yml
+
+sphinx:
+  # Path to your Sphinx configuration file.
+  configuration: doc/conf.py

conda/environment.yml

@@ -1,15 +1,12 @@
 name: stat_tool_dev
 channels:
-  - conda-forge
   - openalea3
+  - conda-forge
 dependencies:
-  - python
   - scikit-build-core
-  - setuptoools-scm
-  - setuptools
   - cmake
-  - pip
   - boost
   - matplotlib-base
+  - pip
   - pip:
       - -e '..[test,dev,doc]'

doc/Doxyfile

@@ -769,7 +769,7 @@ FILE_PATTERNS          =
 # be searched for input files as well.
 # The default value is: NO.
 
-RECURSIVE              = NO
+RECURSIVE              = YES
 
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a

doc/README

@@ -1,13 +1,6 @@
-To generate sphinx documentation:
+To generate Doxygen documentation (C++)
 
-    1. go to root directory of this package
-    2. type "python setup.py build_sphinx"
-    3. type "python setup.py build_sphinx -b latex"
-    !! right now (April 2009), there is an issue in pshinx related to utf-8. Because we are using unicode, we need
-    2.type "python setup.py build_sphinx"
-    to fix manually the latex documents, switching from ut88 to utf8x in the preamble section.
+    type "doxgen Doxyfile" for stat_tool/doc/
+    The documentation is generated in stat_tool/doc/html
 
 
-to generate the epydoc documentation:
-
-    epydoc --html -o stat_tool ../src/openalea/stat_tool/

doc/conf.py

@@ -154,4 +154,4 @@
     ),
 ]
 # Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {"python": ("https://docs.python.org/", None)}
+intersphinx_mapping = {"python": ("https://docs.python.org/", None)}