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Fix #18246: Preserve column order from source database during ingestion#26708

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harshach wants to merge 1 commit intomainfrom
task/18246-wrong-column-order-in-schema-page-7098ee9d
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Fix #18246: Preserve column order from source database during ingestion#26708
harshach wants to merge 1 commit intomainfrom
task/18246-wrong-column-order-in-schema-page-7098ee9d

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@harshach
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@harshach harshach commented Mar 23, 2026

Column order now always reflects the actual database schema. Previously, _sort_array_entity_fields iterated in stored-entity order and appended new columns at the end. Now it iterates in destination (database) order, merges metadata from the stored entity using model_fields_set, and emits a single "replace /columns" patch operation instead of position-based per-element diffs.

Describe your changes:

Fixes

I worked on ... because ...

Type of change:

  • Bug fix
  • Improvement
  • New feature
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • Documentation

Checklist:

  • I have read the CONTRIBUTING document.
  • My PR title is Fixes <issue-number>: <short explanation>
  • I have commented on my code, particularly in hard-to-understand areas.
  • For JSON Schema changes: I updated the migration scripts or explained why it is not needed.

@harshach @claude
Fix #18246: Preserve column order from source database during ingestion
da8daf3 
Column order now always reflects the actual database schema. Previously,
_sort_array_entity_fields iterated in stored-entity order and appended new
columns at the end. Now it iterates in destination (database) order, merges
metadata from the stored entity using model_fields_set, and emits a single
"replace /columns" patch operation instead of position-based per-element diffs.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Copilot AI review requested due to automatic review settings March 23, 2026 18:46
@harshach harshach requested a review from a team as a code owner March 23, 2026 18:46
@github-actions github-actions bot added backend safe to test Add this label to run secure Github workflows on PRs labels Mar 23, 2026
Copilot AI reviewed Mar 23, 2026
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Pull request overview

This PR addresses #18246 by ensuring that column ordering in OpenMetadata reflects the source database schema order after re-ingestion / patching, particularly when a new column is inserted “in the middle” of an existing table.

Changes:

  • Update ingestion patch generation to reorder array-entity fields (e.g., columns) using destination order and emit full-array replace operations for those fields.
  • Adjust and expand integration tests to validate destination-driven column ordering and metadata merging behavior.
  • Add a MySQL ingestion integration test to validate column order preservation across an ALTER TABLE ... AFTER ... change.

Reviewed changes

Copilot reviewed 5 out of 5 changed files in this pull request and generated 1 comment.

Show a summary per file
File Description
openmetadata-integration-tests/src/test/java/org/openmetadata/it/tests/TableResourceIT.java Adds an integration test ensuring PUT/createOrUpdate preserves column order when a new column is inserted between existing columns.
ingestion/tests/integration/ometa/test_ometa_topology_patch.py Updates expectations to assert destination-driven ordering and adds a regression test for the “new column in the middle” scenario.
ingestion/tests/integration/mysql/test_column_order.py Adds an ingestion integration test validating column order preservation after adding a column via ALTER TABLE ... AFTER name.
ingestion/tests/integration/mysql/conftest.py Minor config formatting change for MySQL connection hostPort.
ingestion/src/metadata/ingestion/models/patch_request.py Implements destination-order merging for array fields and switches array handling to full-path replace operations to avoid index-based diffs.

ingestion/src/metadata/ingestion/models/patch_request.py
Comment on lines +442 to +465
for field in active_array_fields:
if hasattr(source, field) and hasattr(destination, field):
src_json = json.loads(
source.model_dump_json(
exclude_unset=True,
exclude_none=True,
include={field: True},
)
)
dst_json = json.loads(
destination.model_dump_json(
exclude_unset=True,
exclude_none=True,
include={field: True},
)
)
if src_json.get(field) != dst_json.get(field):
patch.patch.append(
{
"op": "replace",
"path": f"/{field}",
"value": dst_json.get(field, []),
}
)
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build_patch() builds full-array replace ops by dumping include={field: True} for array entity fields. This ignores the allowed_fields filter contract (e.g., ALLOWED_COMMON_PATCH_FIELDS['columns'] only allows a subset of column properties), so the generated /columns (or /tasks, /fields) replacement can unintentionally patch disallowed subfields or send payload the backend doesn't accept. Consider using the per-field include spec from allowed_fields when available (and the same spec for src/dst comparison + replacement value).

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gitar-bot bot commented Mar 23, 2026 •
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Code Review ✅ Approved

Preserves column order from source database during ingestion, fixing the incorrect column ordering on the schema page. No issues found.

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🛡️ TRIVY SCAN RESULT 🛡️

Target: openmetadata-ingestion-base-slim:trivy (debian 12.13)

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Vulnerabilities (38)

Package Vulnerability ID Severity Installed Version Fixed Version
com.fasterxml.jackson.core:jackson-core CVE-2025-52999 🚨 HIGH 2.12.7 2.15.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.12.7 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-core CVE-2025-52999 🚨 HIGH 2.13.4 2.15.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.13.4 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.15.2 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-databind CVE-2022-42003 🚨 HIGH 2.12.7 2.12.7.1, 2.13.4.2
com.fasterxml.jackson.core:jackson-databind CVE-2022-42004 🚨 HIGH 2.12.7 2.12.7.1, 2.13.4
com.google.code.gson:gson CVE-2022-25647 🚨 HIGH 2.2.4 2.8.9
com.google.protobuf:protobuf-java CVE-2021-22569 🚨 HIGH 3.3.0 3.16.1, 3.18.2, 3.19.2
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apache-airflow CVE-2025-68438 🚨 HIGH 3.1.5 3.1.6
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apache-airflow CVE-2026-28779 🚨 HIGH 3.1.5 3.1.8
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cryptography CVE-2026-26007 🚨 HIGH 42.0.8 46.0.5
jaraco.context CVE-2026-23949 🚨 HIGH 6.0.1 6.1.0
pyOpenSSL CVE-2026-27459 🚨 HIGH 24.1.0 26.0.0
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urllib3 CVE-2025-66418 🚨 HIGH 1.26.20 2.6.0
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🛡️ TRIVY SCAN RESULT 🛡️

Target: openmetadata-ingestion:trivy (debian 12.12)

Vulnerabilities (4)

Package Vulnerability ID Severity Installed Version Fixed Version
libpam-modules CVE-2025-6020 🚨 HIGH 1.5.2-6+deb12u1 1.5.2-6+deb12u2
libpam-modules-bin CVE-2025-6020 🚨 HIGH 1.5.2-6+deb12u1 1.5.2-6+deb12u2
libpam-runtime CVE-2025-6020 🚨 HIGH 1.5.2-6+deb12u1 1.5.2-6+deb12u2
libpam0g CVE-2025-6020 🚨 HIGH 1.5.2-6+deb12u1 1.5.2-6+deb12u2

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Vulnerabilities (39)

Package Vulnerability ID Severity Installed Version Fixed Version
com.fasterxml.jackson.core:jackson-core CVE-2025-52999 🚨 HIGH 2.12.7 2.15.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.12.7 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-core CVE-2025-52999 🚨 HIGH 2.13.4 2.15.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.13.4 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.15.2 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-core GHSA-72hv-8253-57qq 🚨 HIGH 2.16.1 2.18.6, 2.21.1, 3.1.0
com.fasterxml.jackson.core:jackson-databind CVE-2022-42003 🚨 HIGH 2.12.7 2.12.7.1, 2.13.4.2
com.fasterxml.jackson.core:jackson-databind CVE-2022-42004 🚨 HIGH 2.12.7 2.12.7.1, 2.13.4
com.google.code.gson:gson CVE-2022-25647 🚨 HIGH 2.2.4 2.8.9
com.google.protobuf:protobuf-java CVE-2021-22569 🚨 HIGH 3.3.0 3.16.1, 3.18.2, 3.19.2
com.google.protobuf:protobuf-java CVE-2022-3509 🚨 HIGH 3.3.0 3.16.3, 3.19.6, 3.20.3, 3.21.7
com.google.protobuf:protobuf-java CVE-2022-3510 🚨 HIGH 3.3.0 3.16.3, 3.19.6, 3.20.3, 3.21.7
com.google.protobuf:protobuf-java CVE-2024-7254 🚨 HIGH 3.3.0 3.25.5, 4.27.5, 4.28.2
com.google.protobuf:protobuf-java CVE-2021-22569 🚨 HIGH 3.7.1 3.16.1, 3.18.2, 3.19.2
com.google.protobuf:protobuf-java CVE-2022-3509 🚨 HIGH 3.7.1 3.16.3, 3.19.6, 3.20.3, 3.21.7
com.google.protobuf:protobuf-java CVE-2022-3510 🚨 HIGH 3.7.1 3.16.3, 3.19.6, 3.20.3, 3.21.7
com.google.protobuf:protobuf-java CVE-2024-7254 🚨 HIGH 3.7.1 3.25.5, 4.27.5, 4.28.2
com.nimbusds:nimbus-jose-jwt CVE-2023-52428 🚨 HIGH 9.8.1 9.37.2
com.squareup.okhttp3:okhttp CVE-2021-0341 🚨 HIGH 3.12.12 4.9.2
commons-beanutils:commons-beanutils CVE-2025-48734 🚨 HIGH 1.9.4 1.11.0
commons-io:commons-io CVE-2024-47554 🚨 HIGH 2.8.0 2.14.0
dnsjava:dnsjava CVE-2024-25638 🚨 HIGH 2.1.7 3.6.0
io.airlift:aircompressor CVE-2025-67721 🚨 HIGH 0.27 2.0.3
io.netty:netty-codec-http2 CVE-2025-55163 🚨 HIGH 4.1.96.Final 4.2.4.Final, 4.1.124.Final
io.netty:netty-codec-http2 GHSA-xpw8-rcwv-8f8p 🚨 HIGH 4.1.96.Final 4.1.100.Final
io.netty:netty-handler CVE-2025-24970 🚨 HIGH 4.1.96.Final 4.1.118.Final
net.minidev:json-smart CVE-2021-31684 🚨 HIGH 1.3.2 1.3.3, 2.4.4
net.minidev:json-smart CVE-2023-1370 🚨 HIGH 1.3.2 2.4.9
org.apache.avro:avro CVE-2024-47561 🔥 CRITICAL 1.7.7 1.11.4
org.apache.avro:avro CVE-2023-39410 🚨 HIGH 1.7.7 1.11.3
org.apache.derby:derby CVE-2022-46337 🔥 CRITICAL 10.14.2.0 10.14.3, 10.15.2.1, 10.16.1.2, 10.17.1.0
org.apache.ivy:ivy CVE-2022-46751 🚨 HIGH 2.5.1 2.5.2
org.apache.mesos:mesos CVE-2018-1330 🚨 HIGH 1.4.3 1.6.0
org.apache.spark:spark-core_2.12 CVE-2025-54920 🚨 HIGH 3.5.6 3.5.7
org.apache.thrift:libthrift CVE-2019-0205 🚨 HIGH 0.12.0 0.13.0
org.apache.thrift:libthrift CVE-2020-13949 🚨 HIGH 0.12.0 0.14.0
org.apache.zookeeper:zookeeper CVE-2023-44981 🔥 CRITICAL 3.6.3 3.7.2, 3.8.3, 3.9.1
org.eclipse.jetty:jetty-server CVE-2024-13009 🚨 HIGH 9.4.56.v20240826 9.4.57.v20241219
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Authlib CVE-2026-27962 🔥 CRITICAL 1.6.6 1.6.9
Authlib CVE-2026-28490 🚨 HIGH 1.6.6 1.6.9
Authlib CVE-2026-28498 🚨 HIGH 1.6.6 1.6.9
Authlib CVE-2026-28802 🚨 HIGH 1.6.6 1.6.7
PyJWT CVE-2026-32597 🚨 HIGH 2.10.1 2.12.0
Werkzeug CVE-2024-34069 🚨 HIGH 2.2.3 3.0.3
aiohttp CVE-2025-69223 🚨 HIGH 3.12.12 3.13.3
aiohttp CVE-2025-69223 🚨 HIGH 3.13.2 3.13.3
apache-airflow CVE-2025-68438 🚨 HIGH 3.1.5 3.1.6
apache-airflow CVE-2025-68675 🚨 HIGH 3.1.5 3.1.6, 2.11.1
apache-airflow CVE-2026-26929 🚨 HIGH 3.1.5 3.1.8
apache-airflow CVE-2026-28779 🚨 HIGH 3.1.5 3.1.8
apache-airflow CVE-2026-30911 🚨 HIGH 3.1.5 3.1.8
apache-airflow-providers-http CVE-2025-69219 🚨 HIGH 5.6.0 6.0.0
azure-core CVE-2026-21226 🚨 HIGH 1.37.0 1.38.0
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google-cloud-aiplatform CVE-2026-2472 🚨 HIGH 1.130.0 1.131.0
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Package Vulnerability ID Severity Installed Version Fixed Version
stdlib CVE-2025-68121 🔥 CRITICAL v1.25.5 1.24.13, 1.25.7, 1.26.0-rc.3
stdlib CVE-2025-61726 🚨 HIGH v1.25.5 1.24.12, 1.25.6
stdlib CVE-2025-61728 🚨 HIGH v1.25.5 1.24.12, 1.25.6
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Quality Gate Passed Quality Gate passed for 'open-metadata-ingestion'

Issues
2 New issues
0 Accepted issues

Measures
0 Security Hotspots
93.8% Coverage on New Code
0.0% Duplication on New Code

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🟡 Playwright Results — all passed (13 flaky)

✅ 3420 passed · ❌ 0 failed · 🟡 13 flaky · ⏭️ 183 skipped

Shard Passed Failed Flaky Skipped
🟡 Shard 1 453 0 2 2
🟡 Shard 2 304 0 1 1
🟡 Shard 3 676 0 5 33
🟡 Shard 4 702 0 4 41
✅ Shard 5 672 0 0 73
🟡 Shard 6 613 0 1 33
🟡 13 flaky test(s) (passed on retry)
  • Features/DataAssetRulesDisabled.spec.ts › Verify the MlModel entity item action after rules disabled (shard 1, 1 retry)
  • Features/DataAssetRulesDisabled.spec.ts › Verify the Storage Service entity item action after rules disabled (shard 1, 1 retry)
  • Features/TestSuiteMultiPipeline.spec.ts › TestSuite multi pipeline support (shard 2, 1 retry)
  • Features/DataQuality/TestCaseIncidentPermissions.spec.ts › User with TEST_CASE.EDIT_ALL can see edit icon on incidents (shard 3, 1 retry)
  • Features/DataQuality/TestCaseResultPermissions.spec.ts › User with only VIEW cannot PATCH results (shard 3, 1 retry)
  • Features/ImpactAnalysis.spec.ts › verify tier for Asset level impact analysis (shard 3, 1 retry)
  • Features/Permission.spec.ts › Permissions (shard 3, 1 retry)
  • Features/Permissions/GlossaryPermissions.spec.ts › Team-based permissions work correctly (shard 3, 1 retry)
  • Pages/Customproperties-part2.spec.ts › entityReferenceList shows item count, scrollable list, no expand toggle (shard 4, 1 retry)
  • Pages/Domains.spec.ts › Rename domain with tags and glossary terms preserves associations (shard 4, 1 retry)
  • Pages/DomainUIInteractions.spec.ts › Select domain from global dropdown filters explore (shard 4, 1 retry)
  • Pages/Entity.spec.ts › Tag Add, Update and Remove for child entities (shard 4, 1 retry)
  • Pages/Users.spec.ts › Permissions for table details page for Data Consumer (shard 6, 1 retry)

📦 Download artifacts

How to debug locally 
# Download playwright-test-results-<shard> artifact and unzip
npx playwright show-trace path/to/trace.zip    # view trace

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@harshach