refactor: move minimizerReferences from files to buildFiles#442

Merged

ivan-aksamentov merged 135 commits into

cva16-testing-samplefrom

fix/cva16-build-files

Apr 1, 2026

Commits on Dec 5, 2025

add zikav dataset
itpsgit
authored

Commits on Jan 6, 2026

flu: update internal gene trees
rneher
committed

Commits on Jan 7, 2026

Commits on Jan 10, 2026

Commits on Jan 26, 2026

Commits on Feb 25, 2026

Commits on Mar 3, 2026

Merge pull request #410 from nextstrain/wnv-new
rneher
authored

Commits on Mar 4, 2026

chore: release 2026-03-04--12-40-26Z
nextstrain-bot
committed
fix(ci): trigger CI on push to PR branches with merge conflicts
ivan-aksamentov
committed
fix(rebuild): validate dict types in dict_get and dict_set
ivan-aksamentov
committed
fix(rebuild): add JSON schema validation for pathogen.json
ivan-aksamentov
committed
refactor: move migration scripts to dedicated migrations directory
ivan-aksamentov
committed
feat(rebuild): add --nextclade-schemas-dir for local schema validation
ivan-aksamentov
committed
feat(rebuild): detect known pathogen.json defects during validation
ivan-aksamentov
committed
feat(migrations): add migrate_016 to fix misplaced placementMaskRanges
ivan-aksamentov
committed
fix(schema): simplify unknown property warning message
ivan-aksamentov
committed
feat(rebuild): improve defect reporting with severity, impact, and upstream hints
ivan-aksamentov
committed
feat(rebuild): add colored logging with line numbers
ivan-aksamentov
committed
feat(schema): group defect summary by dataset path
ivan-aksamentov
committed
fix(schema): deduplicate validation and suppress redundant warnings
ivan-aksamentov
committed
refactor(schema): replace global state with ValidationContext
ivan-aksamentov
committed
feat(schema): add fuzzy matching for typo and misplacement detection
ivan-aksamentov
committed
refactor(rebuild): remove enabled from top-level index output
ivan-aksamentov
committed

Commits on Mar 5, 2026

Commits on Mar 6, 2026

Commits on Apr 1, 2026