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83 changes: 44 additions & 39 deletions .github/workflows/keep-workflows-enabled.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -24,45 +24,50 @@ jobs:
fail-fast: false
matrix:
include:
- { repo: .github, workflow: keep-workflows-enabled.yaml }
- { repo: augur, workflow: ci.yaml }
- { repo: avian-flu, workflow: ingest-to-phylogenetic-ncbi.yaml }
- { repo: chikv, workflow: fetch-and-ingest.yaml }
- { repo: cli, workflow: ci.yaml }
- { repo: cli, workflow: standalone-installers.yaml }
- { repo: conda-base, workflow: installation.yaml }
- { repo: dengue, workflow: ingest-to-phylogenetic.yaml }
- { repo: ebola, workflow: ci.yaml }
- { repo: ebola, workflow: ingest-to-phylogenetic.yaml }
- { repo: forecasts-ncov, workflow: run-usa-models.yaml }
- { repo: forecasts-ncov, workflow: update-ncov-case-counts.yaml }
- { repo: hmpv, workflow: ingest.yaml }
- { repo: lassa, workflow: ci.yaml }
- { repo: lassa, workflow: ingest-to-phylogenetic.yaml }
- { repo: measles, workflow: ingest-to-phylogenetic.yaml }
- { repo: mpox, workflow: fetch-and-ingest.yaml }
- { repo: mumps, workflow: ingest.yaml }
- { repo: ncov, workflow: rebuild-100k.yml }
- { repo: ncov-ingest, workflow: fetch-and-ingest-genbank-master.yml }
# - { repo: nextclade_data, workflow: update-sars-cov-2-datasets.yml } intentionally disabled
- { repo: nextstrain.org, workflow: index-resources.yml }
- { repo: nextstrain.org, workflow: remind-to-promote.yml }
- { repo: nipah, workflow: ci.yaml }
- { repo: nipah, workflow: ingest.yaml }
- { repo: norovirus, workflow: ingest.yaml }
- { repo: oropouche, workflow: ingest.yaml }
- { repo: rabies, workflow: ingest-to-phylogenetic.yaml }
- { repo: rsv, workflow: fetch-and-ingest.yaml }
- { repo: rsv, workflow: rebuild.yaml }
- { repo: rubella, workflow: ingest.yaml }
- { repo: seasonal-cov, workflow: ingest.yaml }
- { repo: seasonal-flu, workflow: run-private-nextflu-builds.yaml }
- { repo: status, workflow: ci.yaml }
- { repo: tb, workflow: ingest-to-phylogenetic.yaml }
- { repo: WNV, workflow: ci.yaml }
- { repo: WNV, workflow: ingest-to-phylogenetic.yaml }
- { repo: yellow-fever, workflow: ingest.yaml }
- { repo: zika, workflow: ingest.yaml }
- { repo: .github, workflow: keep-workflows-enabled.yaml }
- { repo: augur, workflow: ci.yaml }
- { repo: augur, workflow: docs.yaml }
- { repo: auspice, workflow: docs.yaml }
- { repo: avian-flu, workflow: ingest-to-phylogenetic-ncbi.yaml }
- { repo: chikv, workflow: fetch-and-ingest.yaml }
- { repo: cli, workflow: ci.yaml }
- { repo: cli, workflow: docs.yaml }
- { repo: cli, workflow: standalone-installers.yaml }
- { repo: conda-base, workflow: installation.yaml }
- { repo: dengue, workflow: ingest-to-phylogenetic.yaml }
- { repo: docs.nextstrain.org, workflow: ci.yaml }
- { repo: ebola, workflow: ci.yaml }
- { repo: ebola, workflow: ingest-to-phylogenetic.yaml }
- { repo: forecasts-ncov, workflow: run-usa-models.yaml }
- { repo: forecasts-ncov, workflow: update-ncov-case-counts.yaml }
- { repo: hmpv, workflow: ingest.yaml }
- { repo: lassa, workflow: ci.yaml }
- { repo: lassa, workflow: ingest-to-phylogenetic.yaml }
- { repo: measles, workflow: ingest-to-phylogenetic.yaml }
- { repo: mpox, workflow: fetch-and-ingest.yaml }
- { repo: mumps, workflow: ingest.yaml }
- { repo: ncov, workflow: docs.yaml }
- { repo: ncov, workflow: rebuild-100k.yml }
- { repo: ncov-ingest, workflow: fetch-and-ingest-genbank-master.yml }
# - { repo: nextclade_data, workflow: update-sars-cov-2-datasets.yml } intentionally disabled
- { repo: nextstrain.org, workflow: index-resources.yml }
- { repo: nextstrain.org, workflow: remind-to-promote.yml }
- { repo: nipah, workflow: ci.yaml }
- { repo: nipah, workflow: ingest.yaml }
- { repo: norovirus, workflow: ingest.yaml }
- { repo: oropouche, workflow: ingest.yaml }
- { repo: rabies, workflow: ingest-to-phylogenetic.yaml }
- { repo: rsv, workflow: fetch-and-ingest.yaml }
- { repo: rsv, workflow: rebuild.yaml }
- { repo: rubella, workflow: ingest.yaml }
- { repo: seasonal-cov, workflow: ingest.yaml }
- { repo: seasonal-flu, workflow: run-private-nextflu-builds.yaml }
- { repo: status, workflow: ci.yaml }
- { repo: tb, workflow: ingest-to-phylogenetic.yaml }
- { repo: WNV, workflow: ci.yaml }
- { repo: WNV, workflow: ingest-to-phylogenetic.yaml }
- { repo: yellow-fever, workflow: ingest.yaml }
- { repo: zika, workflow: ingest.yaml }

runs-on: ubuntu-latest
steps:
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