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Merged
vinaysraghavan merged 23 commits into from
Apr 10, 2025
Merged

Create atlas and coordinate_space #215

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344685d
Create atlas and coordinate_space #241
vinaysraghavan Apr 6, 2025
b7046fd
Updated label loader #214
vinaysraghavan Apr 6, 2025
fdc9796
General atlas loader #214
vinaysraghavan Apr 7, 2025
0a9ebe1
Refactor more brain functions #214
vinaysraghavan Apr 7, 2025
f175634
Coordinate space, atlas docstrings
vinaysraghavan Apr 7, 2025
c771235
Annotation import
vinaysraghavan Apr 7, 2025
c2caed4
Verify coordinate space
vinaysraghavan Apr 7, 2025
131cfa2
Channel offset
vinaysraghavan Apr 8, 2025
684b664
Handle simplified temporal ROI
vinaysraghavan Apr 8, 2025
5cee5a9
Custom atlas example
vinaysraghavan Apr 8, 2025
cee934c
Custom atlas annotation test
vinaysraghavan Apr 8, 2025
17ac0e1
Add isleft defaults
vinaysraghavan Apr 8, 2025
361d320
Fix custom atlas test
vinaysraghavan Apr 8, 2025
a98edff
Validate brain inputs #214
vinaysraghavan Apr 8, 2025
2e3e9aa
Atlas validation
vinaysraghavan Apr 8, 2025
13417db
Brain validation order
vinaysraghavan Apr 8, 2025
d079539
Separate lh/rh annotation
vinaysraghavan Apr 9, 2025
d22f469
Per hemisphere labeling
vinaysraghavan Apr 9, 2025
7dcc89e
Fixed test result for bilateral labels
vinaysraghavan Apr 9, 2025
bb9ba27
Removing has_overlay
vinaysraghavan Apr 9, 2025
d4cb2e5
Check label type
vinaysraghavan Apr 10, 2025
3b8471c
parcellate_overlay
vinaysraghavan Apr 10, 2025
0c26828
Parcellate overlay defaults
vinaysraghavan Apr 10, 2025
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14 changes: 12 additions & 2 deletions examples/brain_plotting/plot_intracranial_electrodes.py
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Original file line number Diff line number Diff line change
Expand Up @@ -123,11 +123,21 @@
plt.show()

###############################################################################
# Directly plot Destrieux Atlas region labels overlaid on the brain
# Plot default Destrieux Atlas region labels overlaid on the brain
brain = Brain('pial', subject_dir='./fsaverage/')

brain.lh.overlay = brain.lh.labels
brain.rh.overlay = brain.rh.labels

fig, axes = plot_brain_overlay(brain, cmap='tab20', vmin=1, vmax=75)
fig, axes = plot_brain_overlay(brain, cmap='tab20')
plt.show()

###############################################################################
# Load and plot Glasser Atlas region labels overlaid on the brain
brain = Brain('pial', atlas='HCPMMP1', subject_dir='./fsaverage/')

brain.lh.overlay = brain.lh.labels
brain.rh.overlay = brain.rh.labels

fig, axes = plot_brain_overlay(brain, cmap='prism')
plt.show()
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