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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 285 61

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 60 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 60 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 20 5

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 31 7

Repositories

Showing 10 of 268 repositories
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 30 BSD-3-Clause 5 7 0 Updated Dec 8, 2025
  • dismech Public

    Disease Mechanisms KB

    monarch-initiative/dismech’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 6 Updated Dec 8, 2025
  • namo Public
    monarch-initiative/namo’s past year of commit activity
    Python 3 BSD-3-Clause 0 1 7 Updated Dec 8, 2025
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 60 BSD-3-Clause 5 36 (1 issue needs help) 9 Updated Dec 8, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 7 4 252 (1 issue needs help) 6 Updated Dec 8, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 285 CC-BY-4.0 61 370 (2 issues need help) 56 Updated Dec 8, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Vue 31 BSD-3-Clause 7 211 (3 issues need help) 16 Updated Dec 8, 2025
  • upheno-cross-species-ingest Public
    monarch-initiative/upheno-cross-species-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 3 Updated Dec 8, 2025
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 1 0 9 0 Updated Dec 7, 2025
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 20 BSD-3-Clause 5 38 8 Updated Dec 5, 2025
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