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RFC: integrate PiPNN as an alternative graph-index build algorithm#1049

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SeliMeli:rfc-pipnn-integration
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RFC: integrate PiPNN as an alternative graph-index build algorithm#1049
SeliMeli wants to merge 4 commits into
microsoft:mainfrom
SeliMeli:rfc-pipnn-integration

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Summary

This RFC proposes adding PiPNN (Pick-in-Partitions Nearest Neighbors, arXiv:2602.21247) as a second graph-construction algorithm for DiskANN's disk index, alongside the existing Vamana builder.

PiPNN produces a graph byte-compatible with Vamana's disk format and search API, at up to 6.3× lower build time on our measured workloads (Enron 10M, BigANN 10M). Vamana remains the default and the only algorithm supported for incremental inserts; PiPNN is the proposed faster path for full rebuilds.

Two-stage integration

  • Stage 1 (this RFC): Land PiPNN behind a BuildAlgorithm selector with Vamana as the default. PiPNN is opt-in via a pipnn Cargo feature. Existing build sites see no behavior change. Stage 1 defines explicit milestones (M0–M7) gating Stage 2 readiness.
  • Stage 2 (separate proposal, conditional on Stage 1 milestones): Retire Vamana's full-rebuild path. Vamana remains the implementation for incremental inserts via the hybrid update model — PiPNN for bulk/full rebuilds, Vamana for online inserts, full PiPNN rebuild triggered by recall decay.

Highlights

  • Disk format and search API are unchanged — the on-disk graph layout, PQ codes, search pipeline, and public Rust types remain backward-compatible. PiPNN configuration is added under a new tagged-enum variant.
  • Algorithm description: 4-phase batch builder (Partition / Local k-NN per leaf via GEMM / HashPrune merge / optional final RobustPrune). Detailed in the RFC.
  • Honest gap accounting: explicit milestones for checkpoint/resume, scalar-quantization parity, label-filtered indexes, three-tier memory mitigation, production validation, and operational readiness — each required before Stage 2 is credible.
  • Memory mitigation: documented three-tier build path (one-shot / disk-edges / merged-shards) selected by the existing build_ram_limit_gb knob, bringing PiPNN's peak RSS to or below Vamana's at a configurable build-time cost.
  • Batch-only is a paper-confirmed algorithmic property of PiPNN, not just our implementation. The hybrid update model is the workaround.

Reviewers

Please read the full RFC for trade-offs, benchmark tables, and milestone definitions.

🤖 Generated with Claude Code

@SeliMeli SeliMeli requested review from a team and Copilot May 11, 2026 07:50
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SeliMeli pushed a commit to SeliMeli/DiskANN that referenced this pull request May 11, 2026
Per rfcs/README.md step 4: rename from 00000-short-title.md to
NNNNN-short-title.md using the zero-padded PR number (microsoft#1049).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Pull request overview

Note

Copilot was unable to run its full agentic suite in this review.

Adds an RFC proposing PiPNN as an opt-in, feature-gated alternative to Vamana for DiskANN disk-index graph construction, keeping disk format and search API unchanged.

Changes:

  • Introduces RFC 01049 detailing PiPNN’s algorithm, integration plan, and two-stage rollout
  • Specifies a BuildAlgorithm selector design and feature-gating strategy (pipnn)
  • Documents benchmark results and Stage-1 milestones gating potential Stage-2 deprecation of Vamana full rebuilds

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codecov-commenter commented May 11, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 90.60%. Comparing base (3d3ed4c) to head (4fe210f).

Additional details and impacted files

Impacted file tree graph

@@           Coverage Diff           @@
##             main    #1049   +/-   ##
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  Coverage   90.60%   90.60%           
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  Files         461      461           
  Lines       85494    85494           
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+ Hits        77462    77465    +3     
+ Misses       8032     8029    -3     
Flag Coverage Δ
miri 90.60% <ø> (+<0.01%) ⬆️
unittests 90.56% <ø> (+<0.01%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.
see 1 file with indirect coverage changes

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SeliMeli and others added 4 commits May 11, 2026 08:40
Adds an RFC proposing PiPNN (arXiv:2602.21247) as a second graph-index
build algorithm for DiskANN's disk index. Integration is two-stage:
Stage 1 lands PiPNN behind a build-algorithm selector with Vamana as
default; Stage 2 (conditional on Stage 1 milestones) retires Vamana's
full-rebuild path while keeping it for incremental inserts via the
hybrid update model.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Per rfcs/README.md step 4: rename from 00000-short-title.md to
NNNNN-short-title.md using the zero-padded PR number (microsoft#1049).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
…tones

- Add new M1 for in-memory build/search parity with Vamana (PiPNN today
  only feeds into DiskIndexWriter; a path that populates a
  DiskANNIndex directly for in-mem-only consumers is missing).
- Renumber M1-M7 → M2-M8.
- Convert each milestone's plain-text paragraph into bullet lists
  (Scope / Validation / etc.) for readability per RFC reviewer feedback.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- Explicitly document feature-gated deserialization behavior: configs
  with "algorithm": "PiPNN" fail at parse time in non-pipnn binaries
  with a serde unknown-variant error. Not a backward-compatibility
  regression; configs without build_algorithm parse identically across
  feature combinations.
- Add explanation for disk-edges path being not-slower than one-shot
  despite extra I/O (smaller working set, sequential append spills
  overlap with compute).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
@SeliMeli SeliMeli force-pushed the rfc-pipnn-integration branch from 943fa74 to 4fe210f Compare May 11, 2026 08:40
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3 participants