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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 46 10

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 3 5

Repositories

Showing 10 of 83 repositories
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 46 CC0-1.0 10 402 (4 issues need help) 7 Updated Apr 21, 2026
  • nmdc-ai-eval Public

    Framework and data for performing evaluations for AI-powered NMDC tools.

    microbiomedata/nmdc-ai-eval’s past year of commit activity
    Python 2 0 32 1 Updated Apr 21, 2026
  • nmdc-lakehouse Public
    microbiomedata/nmdc-lakehouse’s past year of commit activity
    Python 0 0 6 2 Updated Apr 21, 2026
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 4 55 10 Updated Apr 20, 2026
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 12 1 115 29 Updated Apr 20, 2026
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    Python 7 7 133 (3 issues need help) 9 Updated Apr 20, 2026
  • ReadsQC Public

    This workflow is a replicate of the QA protocol implemented at JGI for Illumina reads

    microbiomedata/ReadsQC’s past year of commit activity
    WDL 3 8 4 3 Updated Apr 20, 2026
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Jupyter Notebook 2 1 71 6 Updated Apr 20, 2026
  • nmdc-metadata-suggestor-ai-tool Public

    A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

    microbiomedata/nmdc-metadata-suggestor-ai-tool’s past year of commit activity
    Python 1 1 24 6 Updated Apr 20, 2026
  • submission-schema Public

    The NMDC submission schema

    microbiomedata/submission-schema’s past year of commit activity
    Python 1 MIT 4 20 0 Updated Apr 20, 2026
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