Dev

.env

@@ -1,2 +1,5 @@
-SERVER_PORT=33333
-SERVER_HOST=127.0.0.1
+SERVER_PORT=3323
+SERVER_HOST=0.0.0.0
+SPL_ZIP_PATH=/src/spl/TESTDATA_rems_document_and_rems_indexing_spl_files.zip
+REMS_ADMIN_1_URL=http://localhost:8090/
+REMS_ADMIN_2_URL=http://localhost:8095/

.github/pull_request_template.md

@@ -0,0 +1,20 @@
+## Describe your changes
+
+Please include a summary of the changes and the related issue/task. Please also include relevant motivation and context. List any dependencies that are required for this change, including links to other pull requests/branches in other repositories if applicable.
+
+## Issue ticket number and Jira link
+
+Please include the Jira Ticket Number and Link for this issue/task.
+
+## Checklist before requesting a review
+- [ ] I have performed a self-review of my code
+- [ ] Ensure the target / base branch for any feature PR is set to `dev` not main (the only exception to this is releases from `dev` and hotfix branches)
+
+## Checklist for conducting a review
+- [ ] Review the code changes and make sure they all make sense and are necessary. 
+- [ ] Pull the PR branch locally and test by running through workflow and making sure everything works as it is supposed to. 
+
+## Workflow 
+
+Owner of the Pull Request will be responsible for merge after all requirements are met, including approval from at least one reviewer. Additional changes made after a review will dismiss any approvals and require re-review of the additional updates. Auto merging can be enabled below if additional changes are likely not to be needed. The bot will auto assign reviewers to your Pull Request for you.
+

.github/workflows/ci-workflow.yml

@@ -0,0 +1,40 @@
+# name: Lint and Test
+
+# on: [push, pull_request]
+
+# jobs:
+#   lint:
+#     name: Check tsc, lint, and prettier
+#     runs-on: ubuntu-latest
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Checkout Repository
+#       uses: actions/checkout@v3
+#       with:
+#         submodules: true
+#         node-version: '18.x'
+
+#     - run: npm install
+#     - run: npm run lint
+#     - run: npm run prettier
+#       env:
+#         CI: true
+#   test:
+#     name: Test on node ${{ matrix.node-version }} and ${{ matrix.os }}
+#     runs-on: ${{ matrix.os }}
+#     strategy:
+#       matrix:
+#         os: [ubuntu-latest, windows-latest, macos-latest]
+#         node-version: [18]
+
+#     steps:
+#     - uses: actions/checkout@v1
+#     - name: Use Node.js ${{ matrix.node-version }}
+#       uses: actions/setup-node@v1
+#       with:
+#         node-version: ${{ matrix.node-version }}
+#     - run: npm install
+#     - run: git submodule update --init
+#     - run: npm test
+#       env:
+#         CI: true

.github/workflows/docker-cd-dev.yml

@@ -0,0 +1,41 @@
+name: Docker Development Image CD
+
+on:
+  push:
+    branches: [ dev ]
+  workflow_dispatch:
+
+jobs:
+  docker-cd: 
+    runs-on: ubuntu-latest
+    steps:
+
+    - name: Checkout Repository
+      uses: actions/checkout@v3
+      with:
+        submodules: true
+
+    - name: Setup Docker Buildx
+      uses: docker/setup-buildx-action@v2
+
+    - name: Docker meta data
+      id: docker-meta-data
+      uses: docker/metadata-action@v4
+      with:
+        images: codexrems/rems-directory
+        flavor: latest=false
+
+    - name: Log in to Docker Hub
+      uses: docker/login-action@v1
+      with:
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_TOKEN }}
+
+    - name: Build and push Server Docker image
+      uses: docker/build-push-action@v5
+      with:
+        context: .
+        platforms: linux/amd64,linux/arm64
+        push: true
+        tags: codexrems/rems-directory:experimental
+        labels: ${{ steps.docker-meta-data.outputs.labels }}

.github/workflows/docker-cd.yml

@@ -0,0 +1,41 @@
+name: Docker Image CD
+
+on:
+  push:
+    branches: [ main ]
+  workflow_dispatch:
+
+jobs:
+  docker-cd: 
+    runs-on: ubuntu-latest
+    steps:
+
+    - name: Checkout Repository
+      uses: actions/checkout@v3
+      with:
+        submodules: true
+
+    - name: Setup Docker Buildx
+      uses: docker/setup-buildx-action@v2
+
+    - name: Docker meta data
+      id: docker-meta-data
+      uses: docker/metadata-action@v4
+      with:
+        images: codexrems/rems-directory
+        flavor: latest=false
+
+    - name: Log in to Docker Hub
+      uses: docker/login-action@v1
+      with:
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_TOKEN }}
+
+    - name: Build and push Server Docker image
+      uses: docker/build-push-action@v5
+      with:
+        context: .
+        platforms: linux/amd64,linux/arm64
+        push: true
+        tags: codexrems/rems-directory:latest
+        labels: ${{ steps.docker-meta-data.outputs.labels }}

.github/workflows/docker-ci.yml

@@ -0,0 +1,20 @@
+name: Docker Image CI
+
+on:
+  pull_request:
+    branches: [ main, dev ]
+  workflow_dispatch:
+
+
+jobs:
+  docker-ci: 
+    runs-on: ubuntu-latest
+    steps:
+
+    - name: Checkout Repository
+      uses: actions/checkout@v3
+      with:
+          submodules: true
+
+    - name: Test Server Docker image Builds
+      run: docker build .

.github/workflows/docker-tag-cd.yml

@@ -0,0 +1,41 @@
+name: Docker Tagged Image CD
+on:
+  workflow_dispatch:
+  push:
+    tags:
+      - '*'
+
+jobs:
+  docker:
+    runs-on: ubuntu-latest
+    steps:
+
+    - name: Checkout Repository
+      uses: actions/checkout@v3
+      with:
+        submodules: true
+
+    - name: Setup Docker Buildx
+      uses: docker/setup-buildx-action@v2
+
+    - name: Docker meta data
+      id: docker-meta-data
+      uses: docker/metadata-action@v4
+      with:
+        images: codexrems/rems-directory
+        flavor: latest=false
+
+    - name: Log in to Docker Hub
+      uses: docker/login-action@v2
+      with:
+        username: ${{ secrets.DOCKER_USERNAME }}
+        password: ${{ secrets.DOCKER_TOKEN }}
+
+    - name: Build and push
+      uses: docker/build-push-action@v5
+      with:
+        context: .
+        push: true
+        platforms: linux/amd64,linux/arm64
+        tags: ${{ steps.docker-meta-data.outputs.tags }}
+        labels: ${{ steps.docker-meta-data.outputs.labels }}

.gitignore

@@ -1,2 +1,3 @@
 node_modules
 dist
+logs

Dockerfile

@@ -0,0 +1,9 @@
+FROM node:21-alpine
+WORKDIR /home/node/app/rems-directory
+
+COPY --chown=node:node . .
+RUN npm install
+EXPOSE 3323
+
+HEALTHCHECK --interval=30s --start-period=15s --timeout=10m --retries=10 CMD wget --no-verbose --tries=1 --spider http://localhost:33333/health || exit 1
+CMD npm run dev

Dockerfile.dev

@@ -0,0 +1,10 @@
+FROM node:21-alpine
+WORKDIR /home/node/app/rems-directory
+
+COPY --chown=node:node . .
+RUN npm install
+EXPOSE 3323
+EXPOSE 3324
+
+HEALTHCHECK --interval=30s --start-period=15s --timeout=10m --retries=10 CMD wget --no-verbose --tries=1 --spider http://localhost:33333/health || exit 1
+CMD ./dockerRunnerDev.sh

README.md

@@ -1,6 +1,8 @@
 # Description
 
-The [REMS](https://www.fda.gov/drugs/drug-safety-and-availability/risk-evaluation-and-mitigation-strategies-rems) directory  application is an app that acts as a API endpoint similar to the FDA API. It returns medication information when queried at the /drug/ndc.json endpoint. It adds the rems_endpoint that identifies the CDS Hooks server used by the REMS program.
+The [REMS](https://www.fda.gov/drugs/drug-safety-and-availability/risk-evaluation-and-mitigation-strategies-rems) directory  application is an app that acts as a API endpoint similar to the FDA API. It returns medication information when queried at the /drug/ndc.json endpoint. It adds the rems_endpoint that identifies the CDS Hooks server used by the REMS program. The /drugs/spl.zip returns spl information for the drugs it has spl info for, providing a zip file similar to the one from the FDA's website. The /health endpoint is a simple health check endpoint to make sure the server is live and online. 
+
+Disclaimer: The SPL Zip file information is test data not to be representative of real world SPL information. While they are based on the actual SPL Zip from FDA, the files have been modified for the purposes of the prototype and may even be out of date. The data in these files are not intended for medical use.
 
 # Getting Started with REMS Administrator
 
@@ -49,4 +51,7 @@ Following are a list of modifiable paths:
 | URI Name        | Default                                    | Description                                                                                                                 |
 | --------------- | ------------------------------------------ | --------------------------------------------------------------------------------------------------------------------------- |
 | SERVER_PORT | 33333       | The port to run the server on. |
-| SERVER_HOST | `127.0.0.1` | The hostname of the server. |
+| SERVER_HOST | `127.0.0.1` | The hostname of the server. |
+| SPL_ZIP_PATH | /src/spl/TESTDATA_rems_document_and_rems_indexing_spl_files.zip | the path to the spl zip |
+| REMS_ADMIN_1_URL | http://localhost:8090/ | the base url for the first rems admin |
+| REMS_ADMIN_2_URL | http://localhost:8095/ | the base url for the second rems admin |

dockerRunnerDev.sh

@@ -0,0 +1,44 @@
+#!/bin/sh
+
+# Handle closing application on signal interrupt (ctrl + c)
+trap 'kill $CONTINUOUS_INSTALL_PID $SERVER_PID; gradle --stop; exit' INT
+
+mkdir logs 
+# Reset log file content for new application boot
+echo "*** Logs for continuous installer ***" > ./logs/installer.log
+echo "*** Logs for 'npm run start' ***" > ./logs/runner.log
+
+# Print that the application is starting in watch mode
+echo "starting application in watch mode..."
+
+# Start the continious build listener process
+echo "starting continuous installer..."
+npm install
+
+( package_modify_time=$(stat -c %Y package.json)
+package_lock_modify_time=$(stat -c %Y package-lock.json)
+while sleep 1
+do
+    new_package_modify_time=$(stat -c %Y package.json)
+    new_package_lock_modify_time=$(stat -c %Y package-lock.json)    
+
+    if [[ "$package_modify_time" != "$new_package_modify_time" ]] || [[ "$package_lock_modify_time" != "$new_package_lock_modify_time" ]]
+    then
+        echo "running npm install..."
+        npm install | tee ./logs/installer.log
+    fi
+
+    package_modify_time=$new_package_modify_time
+    package_lock_modify_time=$new_package_lock_modify_time
+
+done )  & CONTINUOUS_INSTALL_PID=$!
+
+# Start server process once initial build finishes  
+( npm run dev | tee ./logs/runner.log ) & SERVER_PID=$!
+
+# Handle application background process exiting
+wait $CONTINUOUS_INSTALL_PID $SERVER_PID
+EXIT_CODE=$?
+echo "application exited with exit code $EXIT_CODE..."
+
+

package.json

@@ -14,11 +14,11 @@
   "author": "",
   "license": "Apache-2.0",
   "devDependencies": {
+    "@types/node": "^22.13.13",
     "tsc-watch": "^6.2.1",
     "typescript": "^5.6.3"
   },
   "dependencies": {
-    "@types/node": "^22.10.0",
     "dotenv": "^16.4.7",
     "env-var": "^7.5.0",
     "runner": "^4.0.1"