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Pull requests: malariagen/malariagen-data-python

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Pull requests list

Add __repr__ to Region and CacheMiss utility classes (fixes #1219)
#1220 opened Mar 24, 2026 by Yashsingh045 Loading…
1
3
Docs: Add type hints and examples to cross_metadata docstring
#1216 opened Mar 24, 2026 by abdullahiftikharcode Loading…
3 tasks done
Tighten cache type annotations
#1215 opened Mar 23, 2026 by fr3r34tgf5r4ef Loading…
Migrate gene_cnv() to AnophelesCnvData
#1214 opened Mar 23, 2026 by kunal-10-cloud Loading…
5 tasks done
1
3
Add type hints and docstrings to util.py (#1141)
#1213 opened Mar 23, 2026 by khushthecoder Loading…
1
perf: vectorize cohort_heterozygosity() for 10-50x speedup
#1212 opened Mar 23, 2026 by kunal-10-cloud Loading…
10 tasks done
1
7
fix: replace NotImplementedError in _surveillance_flags with graceful fallback
#1207 opened Mar 23, 2026 by khushthecoder Loading…
1
1
fix(docs): add pip install -e ".[dev,test]" support and update macOS setup guide
#1205 opened Mar 23, 2026 by jhhornn Loading…
1
Fix broken image links in documentation
#1203 opened Mar 23, 2026 by wenebob Loading…
Fix fragile cache name property pattern for _xpehh_gwss_cache_name and _ihs_gwss_cache_name
#1199 opened Mar 22, 2026 by kunal-10-cloud Loading…
6 of 9 tasks
2
15
feat: Add VCF export support for SNP call datasets (GH-1054)
#1197 opened Mar 22, 2026 by khushthecoder Loading…
1
1
Add numpydoc docstring to count_samples()
#1187 opened Mar 22, 2026 by merezki-11 Loading…
Add snp_feature_matrix helper for ML‑ready SNP features
#1186 opened Mar 21, 2026 by ishaniray1 Loading…
1
GH1170: improve error when haplotypes_frequencies_advanced has no coh…
#1184 opened Mar 21, 2026 by karthik642006 Loading…
1
7
Fix: Improve validation in _handle_region_coords
#1183 opened Mar 21, 2026 by vinitjain2005 Loading…
1
1
Fix: classify in-frame complex variants (MNP + INDEL) as INFRAME_COMPLEX_VARIANT
#1181 opened Mar 21, 2026 by vinitjain2005 Loading…
1
5
Improve error handling in _parse_metadata_paths
#1178 opened Mar 21, 2026 by vshnvii Loading…
Feat: add interactive map to plasmodium
#1177 opened Mar 21, 2026 by Kaustubh2k5 Loading…
1
update CI versions in CONTRIBUTING.md and add pyenv alternative in LINUX_SETUP.md
#1176 opened Mar 21, 2026 by parth000007 Loading…
1
Add helper function to explain general_metadata queries
#1174 opened Mar 20, 2026 by vshnvii Loading…
minor code refactor in genome_sequence funcion
#1172 opened Mar 20, 2026 by Kaustubh2k5 Loading…
feat: add list_taxons and list_species_calls utilities to SampleMetadata
#1164 opened Mar 20, 2026 by Aadik1ng Loading…
2
refactor: tighten type annotations for cache variables in sample_metadata.py
#1157 opened Mar 19, 2026 by faizavk Loading…
1
refactor: extract AnophelesDiversityAnalysis into anoph/Diversity.py
#1153 opened Mar 18, 2026 by Srivatsanray Loading…
fix: raise clear error when window_size is too large
#1152 opened Mar 18, 2026 by suhr25 Loading…
6
ProTip! Updated in the last three days: updated:>2026-03-21.