fix: override ICD10CM canonical prefix to use purl.bioontology.org#80
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kevinschaper wants to merge 3 commits intomainfrom
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fix: override ICD10CM canonical prefix to use purl.bioontology.org#80kevinschaper wants to merge 3 commits intomainfrom
kevinschaper wants to merge 3 commits intomainfrom
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matentzn
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Feb 20, 2026
| linkml,biolink,https://w3id.org/biolink/vocab/,canonical | ||
| linkml,dcterms,http://purl.org/dc/terms/,canonical | ||
| linkml,foaf,http://xmlns.com/foaf/0.1/,canonical | ||
| linkml,ICD10CM,http://purl.bioontology.org/ontology/ICD10CM/,canonical |
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I am not against this, note that Bioregistrysuggests this:
https://www.icd10data.com/search?s=
Which is a bit of a hack - redirecting to the search page rather than the concept page for which you cant construct a URI.
icd.codes is dead/returning 403s. Override the ICD10CM canonical prefix to use http://purl.bioontology.org/ontology/ICD10CM/ which redirects to BioPortal. Also refreshes upstream data. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Regenerate merged CSVs so they include both the W3C/OGC prefixes from PR #81 and the ICD10CM canonical override from this branch. Also apply black formatting to context.py and test_prefixmaps.py: the unpinned black in tox flake8 deps picked up 26.1.0, which flags the existing backslash-continuation f-string and a multi-line assertEqual.
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Summary
https://icd.codes/icd10cm/points to a dead domain (returning 403s)ICD10CMtolinked_data.curated.yamlto override the canonical tohttp://purl.bioontology.org/ontology/ICD10CM/, which redirects to BioPortal's ICD10CM class pagesicd.codesURL is preserved as aprefix_aliasmake etl