model weights and config modification #2
Conversation
| data_type: float32 | ||
| data_range: [-inf, inf] | ||
| halo: [0, 0, 32, 48, 48] | ||
| halo: [0, 32, 48, 48] |
There was a problem hiding this comment.
is really so much of the returned output affected by edge artefacts?
There was a problem hiding this comment.
This is based on the settings in Pytorch-3DUNet, which worked well for Kinetochores use case (training as well as inference). But do you suggest to go for smaller values? (I can try that)
There was a problem hiding this comment.
could this be the halo within the network? You have your slicer, etc. to go over the whole volume. Just make sure that this is actually specifying the final output and not an intermediate step within your algorithm. If that's the case leave it as is and let's get this working before we start tweaking things.
There was a problem hiding this comment.
my understanding was that as this slicer is only used within your model it has no direct influence over the overall in- and output of the whole bioimage.io model. Let's take a closer look at this when we have a more or less running example.
No description provided.