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IritaSee and others added 11 commits November 13, 2023 17:34
update init_states_only with new isDutta and using configuration file
Appending drug name on folder name along with concentration value for clarity.

e.g: quinidine_9711.00000
Changelog:
1. Remove parameter drug_name and concentration inside input_deck file
2. Change the flag param for -hill_file. It only need the drug folder (e.g: -hill_file drugs/ )
- inside drug folder, create each folder for drug IC50. make sure the drug name is based on 28 CiPA drugs. inside the drug name folder, make sure the file name is IC50_samples.
3. Create dictionary for drug:concentration based on 28 CiPA drugs inside modules (drug_conc.hpp and drug_conc.cpp)
4. Add loop over drug path by taking name of each drug folder name.
5. Add loop over 4 CMax inside the main code
6. Fix memory leak by adding line for cuda free memory.
7. (misc) Add folder drugs_test inside bin to test the code

Note: the code now consumes around 4GB memory of GPU for 2000 samples. for 16GB memory GPU, it can run for 8000 samples.
…un over csv file inside a folder. The result will be "init_<filename>.csv"
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3 participants