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@khanlab

Khan Computational Imaging Lab

  • 20 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 64 21

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 21 16

  3. tar2bids tar2bids Public

    Python 7 9

  4. zarrnii zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    Python 7 3

  5. scattr scattr Public

    BIDS app for structural connectivity between targeted regions

    Python 6 5

  6. labelmerge labelmerge Public

    Merge label maps

    Python 6 5

Repositories

Showing 10 of 125 repositories
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 16 1 2 Updated Jan 15, 2026
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 64 MIT 21 25 (1 issue needs help) 7 Updated Jan 14, 2026
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Python 4 2 3 2 Updated Jan 1, 2026
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    khanlab/zarrnii’s past year of commit activity
    Python 7 3 10 8 Updated Dec 19, 2025
  • heudiconv Public Forked from nipy/heudiconv

    Flexible DICOM conversion into structured directory layouts

    khanlab/heudiconv’s past year of commit activity
    Python 0 136 0 0 Updated Dec 16, 2025
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 5 MIT 2 8 (3 issues need help) 3 Updated Dec 15, 2025
  • scattr Public

    BIDS app for structural connectivity between targeted regions

    khanlab/scattr’s past year of commit activity
    Python 6 MIT 5 5 (1 issue needs help) 2 Updated Dec 10, 2025
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 21 MIT 16 24 6 Updated Dec 5, 2025
  • cfmm2bids Public

    Snakemake workflow for pulling cfmm dicom server data into bids

    khanlab/cfmm2bids’s past year of commit activity
    Python 0 1 0 1 Updated Dec 3, 2025
  • vesselFM Public Forked from bwittmann/vesselFM

    A foundation model for universal 3D blood vessel segmentation. Paper accepted @ CVPR25.

    khanlab/vesselFM’s past year of commit activity
    Python 0 GPL-3.0 19 0 0 Updated Nov 26, 2025
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Most used topics

mri python bids