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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 15 5

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 34 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

Showing 10 of 147 repositories
  • IgG-vs-Fab-neutralization Public

    Quantitative analysis of virus neutralization by IgG versus Fab antibody forms accounting for IgG avidity and the possibility of ligand depletion for potent antibodies.

    jbloomlab/IgG-vs-Fab-neutralization’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 19, 2026
  • flu_seqneut_pdmH1N1_2023-2024_VaccinatedCohorts Public

    Sequencing-based neutralization assays to measure specificity of vaccine response to HAs from H1N1 strains circulating in 2023-2024

    jbloomlab/flu_seqneut_pdmH1N1_2023-2024_VaccinatedCohorts’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 16, 2026
  • flu-seqneut-2025to2026 Public

    Near real-time data on the human neutralizing antibody landscape to influenza virus in late 2025 to early 2026 to inform vaccine-strain selection in February 2026

    jbloomlab/flu-seqneut-2025to2026’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Jan 14, 2026
  • nextstrain-prot-titers-tree Public

    Build interactive `nextstrain` trees on protein sequences designed to display neutralization titer values

    jbloomlab/nextstrain-prot-titers-tree’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 14, 2026
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    jbloomlab/seqneut-pipeline’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Jan 10, 2026
  • cov-229E-spike-phylo Public
    jbloomlab/cov-229E-spike-phylo’s past year of commit activity
    Python 0 0 0 0 Updated Jan 9, 2026
  • ha-preference-shifts Public

    Comparison of amino-acid preferences across influenza HA subtypes

    jbloomlab/ha-preference-shifts’s past year of commit activity
    HTML 0 0 1 0 Updated Jan 6, 2026
  • jbloomlab.github.io Public

    A website for the Bloom lab

    jbloomlab/jbloomlab.github.io’s past year of commit activity
    Vue 1 0 0 0 Updated Dec 23, 2025
  • polyclonal Public

    Model mutational escape from polyclonal antibodies.

    jbloomlab/polyclonal’s past year of commit activity
    Jupyter Notebook 3 0 3 0 Updated Dec 12, 2025
  • CoV_identities Public

    Identities among SARS-CoV-2 variants and SARS-related coronaviruses

    jbloomlab/CoV_identities’s past year of commit activity
    HTML 2 1 1 0 Updated Nov 11, 2025
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