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added analysis pipeline seeding after registration #132

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Merged
avikdatta merged 1 commit into from
Nov 5, 2025
Merged

added analysis pipeline seeding after registration #132

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15 changes: 15 additions & 0 deletions igf_airflow/utils/dag44_analysis_registration_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -236,6 +236,21 @@ def register_analysis_in_db(
"analysis_name": analysis_name,
"analysis_description": analysis_json}]
aa.store_analysis_data(data)
## fetch analysis id
analysis_id = \
aa.check_analysis_record_by_analysis_name_and_project_id(
analysis_name=analysis_name,
project_id=project_id,
output_mode='one_or_none')
if analysis_id is None:
raise ValueError(
f"No analysis id found for {analysis_name}")
## create pipeline seed status for analysis id and pipeline id
data = [{
'pipeline_id': pipeline_id,
'seed_id': analysis_id[0],
'seed_table': 'analysis'}]
pl.create_pipeline_seed(data)
aa.close_session()
return True
except Exception as e:
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13 changes: 11 additions & 2 deletions test/igf_airflow/test_dag44_analysis_registration_utils.py
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Expand Up @@ -156,9 +156,18 @@ def test_register_analysis_in_db(self):
analysis_id = \
aa.check_analysis_record_by_analysis_name_and_project_id(
analysis_name='analysis_2',
project_id=2)
aa.close_session()
project_id=2,
output_mode='one_or_none')
assert analysis_id is not None
pl = PipelineAdaptor(**{'session': aa.session})
pipe_seed = \
pl.fetch_pipeline_seed(
pipeline_id=1,
seed_id=analysis_id[0],
seed_table='analysis',
output_mode='one_or_none')
assert pipe_seed is not None
aa.close_session()
with pytest.raises(Exception):
status = \
register_analysis_in_db(
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