Hot fix for supporting older AtoMx output format

igf_data/utils/cosmxutils.py

@@ -195,6 +195,10 @@ def fov_range_to_list(fov_range: str) -> List[int]:
   """
   try:
     range_list = list()
+    if "," in fov_range:
+      range_list = fov_range.split(",")
+      range_list = [int(i) for i in range_list]
+      return range_list
     range_match = re.match(r'^(\d+)-(\d+)$', fov_range)
     if range_match:
       start, end = map(int, range_match.groups())

test/utils/test_cosmxutils.py

@@ -27,7 +27,8 @@
   create_or_update_cosmx_slide_fov_annotation,
   create_cosmx_slide_fov_count_qc,
   validate_cosmx_count_file,
-  CosmxSlideType
+  CosmxSlideType,
+  fov_range_to_list
 )
 
 class Analysisadaptor_test1(unittest.TestCase):
@@ -403,5 +404,16 @@ def test_create_or_update_cosmx_slide_fov_count_qc(self):
     self.assertEqual(str(results[2]), '76.45')
     base.close_session()
 
+  def test_fov_range_to_list(self):
+    range_list = fov_range_to_list(fov_range="1-10")
+    assert isinstance(range_list, list)
+    assert len(range_list) == 10
+    assert 10 in range_list
+    range_list = fov_range_to_list(fov_range="1,2,3,4,5")
+    assert isinstance(range_list, list)
+    assert len(range_list) == 5
+    assert 5 in range_list
+
+
 if __name__ == '__main__':
   unittest.main()