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Hot fix: switching off cosmx project metadata registration #122

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Merged
avikdatta merged 1 commit into from
Sep 5, 2025
Merged

Hot fix: switching off cosmx project metadata registration #122

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25 changes: 13 additions & 12 deletions igf_airflow/utils/dag20_portal_metadata_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -65,18 +65,19 @@ def _parse_default_user_email_from_email_config(

def fetch_validated_manual_metadata_from_portal_and_load_func(**context):
try:
default_project_user_email = \
_parse_default_user_email_from_email_config(EMAIL_CONF)
metadata_registration = UnifiedMetadataRegistration(
portal_config_file=IGF_PORTAL_CONF,
fetch_metadata_url_suffix=PORTAL_FETCH_MANUAL_METADATA_URL_SUFFIX,
sync_metadata_url_suffix=PORTAL_SYNC_MANUAL_METADATA_URL_SUFFIX,
metadata_validation_schema=MANUAL_METADATA_VALIDATION_SCHEMA,
db_config_file=DATABASE_CONFIG_FILE,
default_project_user_email=default_project_user_email,
samples_required=False,)
error_list = \
metadata_registration.execute()
# default_project_user_email = \
# _parse_default_user_email_from_email_config(EMAIL_CONF)
# metadata_registration = UnifiedMetadataRegistration(
# portal_config_file=IGF_PORTAL_CONF,
# fetch_metadata_url_suffix=PORTAL_FETCH_MANUAL_METADATA_URL_SUFFIX,
# sync_metadata_url_suffix=PORTAL_SYNC_MANUAL_METADATA_URL_SUFFIX,
# metadata_validation_schema=MANUAL_METADATA_VALIDATION_SCHEMA,
# db_config_file=DATABASE_CONFIG_FILE,
# default_project_user_email=default_project_user_email,
# samples_required=False,)
# error_list = \
# metadata_registration.execute()
error_list = list()
if len(error_list) > 0:
message = \
f"List of errors while getting manual metadata: {' ,'.join(error_list)}"
Expand Down